{
    "bcoid": "GLY_000692",
    "title": "Glycan PubChem Xref Status",
    "description": "The dataset provides cross-references status to PubChem compound (CID) and substance (SID) for the associated ...",
    "filename_list": "glycan_pubchem_status.csv",
    "filename": "glycan_pubchem_status.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "PubChem Xref Status"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Sus scrofa",
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Saccharomyces cerevisiae",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa domesticus",
            "Dictyostelium discoideum",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepacivirus C"
        ],
        "file_category": [
            "others"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "yes..."
            ],
            [
                "G00008BG...",
                "yes..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "pubchem_xref..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "pubchem_xref_exists"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "G00002CF",
                "yes",
                "glycan_xref_pubchem_substance|glycan_xref_pubchem_substance",
                "GlyTouCan:G00002CF|491870160"
            ],
            [
                "G00008BG",
                "yes",
                "glycan_xref_pubchem_substance|glycan_xref_pubchem_substance",
                "GlyTouCan:G00008BG|491870161"
            ]
        ]
    },
    "readme": "Name\n   - Glycan PubChem Xref Status\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2022-09-06T16:07:55.305836\n\nModified on\n   - 2024-05-17T11:24:09.560Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides cross-references status to PubChem compound (CID) and substance (SID) for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). The dataset allows to know whether a given GlyGen GlyTouCan has PubChem mapping or not.\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - PubChem\n   - Cross-references\n   - ID/Accession Mapping\n\n   Pipeline Steps\n   - Step-1: The script checks all the GlyTouCan accession in masterlist for PubChem mapping. The mapped GlyTouCan accessions to PubChem CID and SID are then extracted in the csv. If the GlyTouCan to PubChem mapping exists then the pubchem_xref_exists is yes\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: glycan_xref_pubchem.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_xref_pubchem.csv\n   Output Subdomain\n      Name: glycan_pubchem_status.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_pubchem_status.csv\n      Name: glycan_pubchem_status.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_pubchem_status.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\"\n     Description: \"\"\n      Unique Values: \"59995\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/glycan_pubchem_status.csv"
}