{
    "bcoid": "GLY_000687",
    "title": "Fruitfly Reactions Rhea",
    "description": "The Fruitfly Protein Reactions (Rhea) dataset contains reactions information for pathways for fruitfly ...",
    "filename_list": "fruitfly_protein_reactions_rhea.csv",
    "filename": "fruitfly_protein_reactions_rhea.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reactions Rhea"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "pathway/enzymes"
        ]
    },
    "minitable": {
        "content": [
            [
                "10008...",
                "..."
            ],
            [
                "10024...",
                "..."
            ]
        ],
        "headers": [
            "reaction_id...",
            "reaction_nam..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "reaction_id"
                },
                {
                    "type": "string",
                    "label": "reaction_name"
                },
                {
                    "type": "string",
                    "label": "cellular_location"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "pathway_id"
                },
                {
                    "type": "string",
                    "label": "equation"
                },
                {
                    "type": "string",
                    "label": "reaction_summary"
                }
            ],
            [
                "10008",
                "",
                "",
                "",
                "",
                "a hydroperoxide + [protein]-dithiol = [protein]-disulfide + an alcohol + H2O",
                ""
            ],
            [
                "10024",
                "",
                "",
                "",
                "",
                "L-lysyl-[histone] + S-adenosyl-L-methionine = N(6)-methyl-L-lysyl-[histone] + S-adenosyl-L-homocysteine + H(+)",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Reactions Rhea\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2022-09-06T11:37:59.766468\n\nModified on\n   - 2024-05-17T11:24:09.364Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Protein Reactions (Rhea) dataset contains reactions information for pathways for fruitfly [taxid:7227] UniProtKB accessions that includes reaction participants ID, reaction ID, pathway ID, summary etc from Rhea database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Rhea and GlyGen\"\n\nDescription Domain\n   Keywords\n   - Rhea\n   - Reactions\n   - Participants\n   - Enzymes\n\n   Pipeline Steps\n   - Step-1: The script loads the Rhea reaction data from the triplestore containing triples from nt file to retrieve the information associated with the Rhea reaction IDs and maps it to the UniProtKB canonical accessions and extracts the dataset in the csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-drosophila-melanogaster.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-drosophila-melanogaster.nt\n   Output Subdomain\n      Name: fruitfly_protein_reactions_rhea.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_reactions_rhea.csv\n      Name: fruitfly_protein_reactions_rhea.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_reactions_rhea.stat.csv\n\nFields\n      Name: \"reaction_id\"\"\n     Description: \"\"\n      Unique Values: \"1834\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/fruitfly_protein_reactions_rhea.csv"
}