{
    "bcoid": "GLY_000683",
    "title": "Fruitfly Phosphorylation Sites (iPTMNet)",
    "description": "The Fruitfly Phosphorylation Sites (iPTMNet) dataset contains Drosophila melanogaster [taxid:7227] phosphorylation ...",
    "filename_list": "fruitfly_proteoform_phosphorylation_sites_iptmnet.csv",
    "filename": "fruitfly_proteoform_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Sites (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "phosphorylation_sites_"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9VT65-1...",
                "240..."
            ],
            [
                "Q9VT65-1...",
                "240..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "phosphorylat..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "phosphorylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "kinase_uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "kinase_gene_name"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "site_seq"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "Q9VT65-1",
                "240",
                "Ser",
                "",
                "",
                "protein_xref_intact",
                "Q9VT65",
                "protein_xref_iptmnet",
                "Q9VT65",
                "240",
                "240",
                "Ser",
                "Ser",
                "S",
                ""
            ],
            [
                "Q9VT65-1",
                "240",
                "Ser",
                "",
                "",
                "protein_xref_iptmnet",
                "Q9VT65",
                "protein_xref_iptmnet",
                "Q9VT65",
                "240",
                "240",
                "Ser",
                "Ser",
                "S",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Phosphorylation Sites (iPTMNet)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2022-09-06T09:56:04.354720\n\nModified on\n   - 2024-05-21T14:47:19.888Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Phosphorylation Sites (iPTMNet) dataset contains Drosophila melanogaster [taxid:7227] phosphorylation sites from iPTMNet database. The protein and sites are mapped to UniProtKB canonical accessions and fasta sequence. If you use this dataset please provide proper attribution to iPTMnet-GlyGen.\n\nDescription Domain\n   Keywords\n   - iPTMnet\n   - Phosphorylation sites\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: fruitfly_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_masterlist.csv\n      Name: residue_ptm_mod_mapping.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/residue_ptm_mod_mapping.csv\n      Name: ptm.txt\n      URI: https:/data.glygen.org/ln2downloads/iptmnet/2026_05_28/ptm.txt\n   Output Subdomain\n      Name: fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n      Name: fruitfly_proteoform_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"767\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.csv"
}