{
    "bcoid": "GLY_000612",
    "title": "SARS-CoV1 Glycosylation Sites (Literature)",
    "description": "",
    "filename_list": "sarscov1_proteoform_glycosylation_sites_literature.csv",
    "filename": "sarscov1_proteoform_glycosylation_sites_literature.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome-related coronavirus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycosylation Sites"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "glycosylation_sites_"
        ]
    },
    "minitable": {
        "content": [
            [
                "P59596-1...",
                "4..."
            ],
            [
                "P59596-1...",
                "4..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "source_cell_line_cellosaurus_name"
                },
                {
                    "type": "string",
                    "label": "source_cell_line_cellosaurus_id"
                },
                {
                    "type": "string",
                    "label": "n_sequon"
                },
                {
                    "type": "string",
                    "label": "n_sequon_type"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "site_seq"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_unicarbkb_ds",
                "GLY_000612",
                "protein_xref_glygen_ds",
                "GLY_000612",
                "BHK TK-",
                "CVCL_4126",
                "NGT",
                "NXT",
                "4",
                "4",
                "Asn",
                "Asn",
                "N",
                ""
            ],
            [
                "P59596-1",
                "4",
                "Asn",
                "",
                "N-linked",
                "protein_xref_pubmed",
                "16442106",
                "protein_xref_glygen_ds",
                "GLY_000612",
                "BHK TK-",
                "CVCL_4126",
                "NGT",
                "NXT",
                "4",
                "4",
                "Asn",
                "Asn",
                "N",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Glycosylation Sites (Literature)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-10-15T15:07:06.347029\n\nModified on\n   - 2024-05-17T11:24:06.557Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - \n\nDescription Domain\n   Keywords\n   - glycosylation\n   - Literature\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycosylation_sites_lit_23090970_s2.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/glycosylation_sites_lit_23090970_s2.csv\n      Name: glycosylation_sites_lit_23090970_s5.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/glycosylation_sites_lit_23090970_s5.csv\n      Name: glycosylation_sites_lit_24190977_s5.cs\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/glycosylation_sites_lit_24190977_s5.cs\n      Name: glycosylation_sites_lit_x_sx.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/glycosylation_sites_lit_x_sx.csv\n      Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/hcv1a_proteoform_glycosylation_sites_literature.csv\n      Name: sarscov1_proteoform_glycosylation_sites_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/sarscov1_proteoform_glycosylation_sites_literature.csv\n      Name: n_sequon_info.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/n_sequon_info.csv\n      Name: sample_mapping.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/sample_mapping.csv\n      Name: cellosaurus.txt\n      URI: https:/data.glygen.org/ln2downloads/cellosaurus/2026_06_02/cellosaurus.txt\n   Output Subdomain\n      Name: sarscov1_proteoform_glycosylation_sites_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_proteoform_glycosylation_sites_literature.csv\n      Name: sarscov1_proteoform_glycosylation_sites_literature.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_proteoform_glycosylation_sites_literature.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/sarscov1_proteoform_glycosylation_sites_literature.csv"
}