{ "bcoid": "GLY_000611", "title": "Human Glycosylation Sites UniCarbKB Glycomics Study", "description": "The Human UniCarbKB Glycomics Study contains Homo sapiens [taxid:9606] glycan tissue expression data. ...", "filename_list": "human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv", "filename": "human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv", "filetype": "csv", "categories": { "status": [ "Reviewed" ], "molecule": [ "Proteoform" ], "species": [ "Homo sapiens" ], "tag": [ "UniCarbKB glycosylation sites glycomics study" ], "file_type": [ "csv" ], "scope": [ "internal" ], "file_category": [ "glycosylation_sites_" ] }, "minitable": { "content": [ [ "...", "..." ], [ "...", "..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "unicarbkb_id" }, { "type": "string", "label": "composition" }, { "type": "string", "label": "curation_notes" }, { "type": "string", "label": "additonal_notes" }, { "type": "string", "label": "protein" }, { "type": "string", "label": "position" }, { "type": "string", "label": "Id" }, { "type": "string", "label": "toucan" }, { "type": "string", "label": "type_amino_acid" }, { "type": "string", "label": "notes" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "additional_notes" }, { "type": "string", "label": "doi" }, { "type": "string", "label": "glytoucan_structure" }, { "type": "string", "label": "swiss_model" }, { "type": "string", "label": "source_tissue_id" }, { "type": "string", "label": "source_tissue_name" }, { "type": "string", "label": "species" }, { "type": "string", "label": "Uoxf" }, { "type": "string", "label": "HexNAc" }, { "type": "string", "label": "Hex" }, { "type": "string", "label": "dHex" }, { "type": "string", "label": "NeuAc" }, { "type": "string", "label": "abundance" }, { "type": "string", "label": "pdb" }, { "type": "string", "label": "related" }, { "type": "string", "label": "preprint" }, { "type": "string", "label": "peptide" }, { "type": "string", "label": "composition1" }, { "type": "string", "label": "composition2" }, { "type": "string", "label": "composition3" }, { "type": "string", "label": "pos_start" }, { "type": "string", "label": "pos_end" }, { "type": "string", "label": "doid" }, { "type": "string", "label": "disease_name" }, { "type": "string", "label": "RT" }, { "type": "string", "label": "GU" }, { "type": "string", "label": "Sia" }, { "type": "string", "label": "Fuc" }, { "type": "string", "label": "COMPLEX" }, { "type": "string", "label": "HM" }, { "type": "string", "label": "PM" }, { "type": "string", "label": "sample_preparation" }, { "type": "string", "label": "n_sequon" }, { "type": "string", "label": "n_sequon_type" }, { "type": "string", "label": "start_pos" }, { "type": "string", "label": "end_pos" }, { "type": "string", "label": "start_aa" }, { "type": "string", "label": "end_aa" }, { "type": "string", "label": "site_seq" }, { "type": "string", "label": "isoform_mapping_notes" } ], [ "", "", "", "G32977PZ", "O-linked", "protein_xref_pubmed", "34191522", "protein_xref_unicarbkb_ds", "GLY_000611", "G32977PZ", "", "", "", "", "", "G32977PZ", "G32977PZ", "", "FLR-HILIC-UPLC data of 2AB labelled glycans outlining GU values and relative area. Other data including PGC available in manuscript.", "34191522", "", "10.1021/acs.jproteome.1c00219", "", "", "UBERON:0002435", "striatum", "Homo sapiens", "", "", "", "", "", "1.4", "", "", "", "", "", "", "", "", "", "", "", "8.29", "2.64", "", "", "", "", "", "", "", "", "", "", "", "", "", "" ], [ "", "", "", "G39213OD", "O-linked", "protein_xref_pubmed", "34191522", "protein_xref_unicarbkb_ds", "GLY_000611", "G39213OD", "", "", "", "", "", "G39213OD", "G39213OD", "", "FLR-HILIC-UPLC data of 2AB labelled glycans outlining GU values and relative area. Other data including PGC available in manuscript.", "34191522", "", "10.1021/acs.jproteome.1c00219", "", "", "UBERON:0002435", "striatum", "Homo sapiens", "", "", "", "", "", "0.2", "", "", "", "", "", "", "", "", "", "", "", "8.1", "2.59", "", "", "", "", "", "", "", "", "", "", "", "", "", "" ] ] }, "readme": "Name\n - Human Glycosylation Sites UniCarbKB Glycomics Study\n\nVersion\n - v-2.12.1\n\nCreated on\n - 2021-10-15T14:54:25.104978\n\nModified on\n - 2025-03-03T16:12:01.436Z\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human UniCarbKB Glycomics Study contains Homo sapiens [taxid:9606] glycan tissue expression data. If you use this dataset please provide proper attribution to UniCarbKB and GlyGen. UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. \n\nDescription Domain\n Keywords\n - proteins\n - canonical\n - glycosylation sites\n - glycan\n - UniCarbKB\n - GlyTouCan\n - glycomics study\n\nExecution Domain\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: n_sequon_info.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/n_sequon_info.csv\n Name: sample_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/sample_mapping.csv\n Name: cellosaurus.txt\n URI: https:/data.glygen.org/ln2downloads/cellosaurus/2026_06_02/cellosaurus.txt\n Name: known_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2downloads/unicarbkb/01_11_2022/known_unicarbkb_glycomics_study.csv\n Output Subdomain\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv" }