{
    "bcoid": "GLY_000609",
    "title": "Rat Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Rat Proteoform Phosphorylation Citations (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] ...",
    "filename_list": "rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9EQS0-1...",
                "Quantitative..."
            ],
            [
                "Q924C3-1...",
                "Quantitative..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "Q9EQS0-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
                "protein_xref_uniprotkb",
                "Q9EQS0",
                ""
            ],
            [
                "Q924C3-1",
                "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.",
                "Nature communications",
                "2012 Jun 6",
                "Lundby A, Secher A, Lage K, Nordsborg NB, Dmytriyev A, Lundby C, Olsen JV",
                "protein_xref_pubmed",
                "22673903",
                "protein_xref_uniprotkb",
                "Q924C3",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-10-15T08:03:13.531431\n\nModified on\n   - 2025-10-09T14:27:09.947Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Proteoform Phosphorylation Citations (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] publication information of phosphorylated glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: rat_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: rat_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2074\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}