{
    "bcoid": "GLY_000568",
    "title": "Mouse Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Mouse Proteoform Citations (iPTMNet) contains Mus musculus [taxid:10090] publication information ...",
    "filename_list": "mouse_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "mouse_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P01921-1...",
                "PDIA3 epitop..."
            ],
            [
                "P22682-1...",
                "Comparative ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P01921-1",
                "PDIA3 epitope-driven immune autoreactivity contributes to hepatic damage in type 2 diabetes.",
                "Science immunology",
                "2022 Aug 12",
                "Clement CC, Osan J, Buque A, Nanaware PP, Chang YC, Perino G, Shetty M, Yamazaki T, Tsai WL, Urbanska AM, Calvo-Calle JM, Ramsamooj S, Ramsamooj S, Vergani D, Mieli-Vergani G, Terziroli Beretta-Piccoli B, Gadina M, Montagna C, Goncalves MD, Sallusto F, Galluzzi L, Soni RK, Stern LJ, Santambrogio L",
                "protein_xref_pubmed",
                "35984892",
                "protein_xref_iptmnet",
                "P14483",
                ""
            ],
            [
                "P22682-1",
                "Comparative quantitative mass spectrometry analysis of MHC class II-associated peptides reveals a role of GILT in formation of self-peptide repertoire.",
                "PloS one",
                "2010-05-12",
                "Bogunovic Branka, Srinivasan Priya, Ueda Yumi, Tomita York, Maric Maja",
                "protein_xref_pubmed",
                "20485683",
                "protein_xref_iptmnet",
                "P22682",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Mouse Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-06-03T17:31:30.200524\n\nModified on\n   - 2024-12-05T19:36:18.634Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Proteoform Citations (iPTMNet) contains Mus musculus [taxid:10090] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: mouse_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: mouse_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"4853\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}