{
    "bcoid": "GLY_000539",
    "title": "Glycan Xref GNOme",
    "description": "The datasets provides a list of GlyTouCan accessions which are supported by GNOme ontology (https://gnome.glyomics.org/) ...",
    "filename_list": "glycan_xref_gnome.csv",
    "filename": "glycan_xref_gnome.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "GNOme"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Sus scrofa",
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Saccharomyces cerevisiae",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa domesticus",
            "Dictyostelium discoideum",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepacivirus C"
        ],
        "file_category": [
            "xref_"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "G00002CF..."
            ],
            [
                "G00008BG...",
                "G00008BG..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "xref_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                }
            ],
            [
                "G00002CF",
                "G00002CF",
                "glycan_xref_gnome_cross_reference"
            ],
            [
                "G00008BG",
                "G00008BG",
                "glycan_xref_gnome_cross_reference"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Xref GNOme\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-02-11T14:43:28.543150\n\nModified on\n   - 2024-05-17T11:24:03.864Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The datasets provides a list of GlyTouCan accessions which are supported by GNOme ontology (https://gnome.glyomics.org/) (https://gnome.glyomics.org/restrictions/GlyGen.StructureBrowser.html). \n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - GNOme\n   - accessions\n   - ID/Accession Mapping\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: gnome.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2026_07_27/export/gnome.tsv\n   Output Subdomain\n      Name: glycan_xref_gnome.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_xref_gnome.csv\n      Name: glycan_xref_gnome.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_xref_gnome.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\"\n     Description: \"\"\n      Unique Values: \"59717\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/glycan_xref_gnome.csv"
}