{
    "bcoid": "GLY_000516",
    "title": "Human Proteoform Citations (Literature Mining)",
    "description": "The Human Proteoform Citations [Automatic Literature Mining] dataset contains Homo sapiens [taxid:9606] ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_literature_mining.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_literature_mining.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "O00300-1...",
                "Deletion of ..."
            ],
            [
                "O00555-8...",
                "Stroke-Like ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "O00300-1",
                "Deletion of aspartate 182 in OPG causes juvenile Paget's disease by impairing both protein secretion and binding to RANKL.",
                "Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research",
                "2006 Mar",
                "Middleton-Hardie C, Zhu Q, Cundy H, Lin JM, Callon K, Tong PC, Xu J, Grey A, Cornish J, Naot D",
                "protein_xref_pubmed",
                "16491292",
                "protein_xref_glygen_ds",
                "GLY_000481",
                "",
                ""
            ],
            [
                "O00555-8",
                "Stroke-Like Episodes and Cerebellar Syndrome in Phosphomannomutase Deficiency (PMM2-CDG): Evidence for Hypoglycosylation-Driven Channelopathy.",
                "International journal of molecular sciences",
                "2018 Feb 22",
                "Izquierdo-Serra M, Martinez-Monseny AF, Lopez L, Carrillo-Garcia J, Edo A, Ortigoza-Escobar JD, Garcia O, Cancho-Candela R, Carrasco-Marina ML, Gutierrez-Solana LG, Cuadras D, Muchart J, Montero R, Artuch R, Perez-Cerda C, Perez B, Perez-Duenas B, Macaya A, Fernandez-Fernandez JM, Serrano M",
                "protein_xref_pubmed",
                "29470411",
                "protein_xref_glygen_ds",
                "GLY_000481",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Citations (Literature Mining)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-06-26T15:29:27.375356\n\nModified on\n   - 2025-04-15T14:23:00.332Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Proteoform Citations [Automatic Literature Mining] dataset contains Homo sapiens [taxid:9606] citation details of the publications present in the Human Glycosylation Sites [Automatic Literature Mining] [Automatically verified] dataset (https://data.glygen.org/GLY_000481).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - Literature\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.csv\n      Name: human_proteoform_citations_glycosylation_sites_literature_mining.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"533\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.csv"
}