{
    "bcoid": "GLY_000464",
    "title": "GlyGen-Pharos Crossreferences Mapping",
    "description": "The GlyGen-Pharos Cross-references Mapping dataset contains GlyGen's Homo sapiens [taxid:9606] UniProtKB ...",
    "filename_list": "protein_glygen_pharos_xref_mapping.csv",
    "filename": "protein_glygen_pharos_xref_mapping.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "GlyGen-Pharos Crossreferences"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "xref_mapping"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8NDZ0...",
                "https://glyg..."
            ],
            [
                "P50461...",
                "https://glyg..."
            ]
        ],
        "headers": [
            "uniprotkb_ac...",
            "glygen_prote..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_ac"
                },
                {
                    "type": "string",
                    "label": "glygen_protein_url"
                }
            ],
            [
                "Q8NDZ0",
                "https://glygen.org/protein/Q8NDZ0"
            ],
            [
                "P50461",
                "https://glygen.org/protein/P50461"
            ]
        ]
    },
    "readme": "Name\n   - GlyGen-Pharos Crossreferences Mapping\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-04-03T22:31:02.233246\n\nModified on\n   - 2024-05-17T11:24:01.507Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The GlyGen-Pharos Cross-references Mapping dataset contains GlyGen's Homo sapiens [taxid:9606] UniProtKB accessions and corresponding GlyGen URLs.\n   - The dataset is created for Pharos database to crosslink their protein page links to GlyGen protein pages.\n   - The log file contains the Pharos protein accessions that could not be mapped to GlyGen protein accessions.\n\nDescription Domain\n   Keywords\n   - Pharos\n   - GlyGen\n   - crossreferences\n   - human\n   - mouse\n   - rat\n\n   Pipeline Steps\n   - Step-1: The script loads the human UniProtKB GlyGen accessions that mapped to the Pharos protein accessions along with the GlyGen protein accession URL and extracts it into csv dataset file. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: arabidopsis_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/arabidopsis_protein_masterlist.csv\n      Name: bdbv_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_masterlist.csv\n      Name: bovine_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_masterlist.csv\n      Name: chicken_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_masterlist.csv\n      Name: dicty_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_masterlist.csv\n      Name: ebov_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_protein_masterlist.csv\n      Name: fruitfly_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_protein_masterlist.csv\n      Name: hamster_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_masterlist.csv\n      Name: hcv1a_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1a_protein_masterlist.csv\n      Name: hcv1b_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_masterlist.csv\n      Name: human_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_masterlist.csv\n      Name: mouse_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_masterlist.csv\n      Name: pig_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_masterlist.csv\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_masterlist.csv\n      Name: sarscov1_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_protein_masterlist.csv\n      Name: sarscov2_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_masterlist.csv\n      Name: yeast_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_masterlist.csv\n      Name: zebrafish_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_protein_masterlist.csv\n   Output Subdomain\n      Name: protein_glygen_pharos_xref_mapping.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/protein_glygen_pharos_xref_mapping.csv\n      Name: protein_glygen_pharos_xref_mapping.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/protein_glygen_pharos_xref_mapping.stat.csv\n\nFields\n      Name: \"uniprotkb_ac\"\"\n     Description: \"\"\n      Unique Values: \"19913\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/protein_glygen_pharos_xref_mapping.csv"
}