{
    "bcoid": "GLY_000356",
    "title": "HCV1b Protein Citations (UniProtKB)",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Citations dataset contains publication ...",
    "filename_list": "hcv1b_protein_citations_uniprotkb.csv",
    "filename": "hcv1b_protein_citations_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis c virus (isolate japanese)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "Modulation o..."
            ],
            [
                "P26662-1...",
                "Hepatitis C ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P26662-1",
                "Modulation of retinoid signaling by a cytoplasmic viral protein via sequestration of Sp110b, a potent transcriptional corepressor of retinoic acid receptor, from the nucleus.",
                "Molecular and cellular biology",
                "2003-11",
                "Watashi Koichi, Hijikata Makoto, Tagawa Ayako, Doi Takahiro, Marusawa Hiroyuki, Shimotohno Kunitada",
                "protein_xref_pubmed",
                "14559998",
                "protein_xref_uniprotkb",
                "P26662"
            ],
            [
                "P26662-1",
                "Hepatitis C virus core protein acts as a trans-modulating factor on internal translation initiation of the viral RNA.",
                "The Journal of biological chemistry",
                "2005-05-06",
                "Boni S\u00e9bastien, Lavergne Jean-Pierre, Boulant Steeve, Cahour Annie",
                "protein_xref_pubmed",
                "15760888",
                "protein_xref_uniprotkb",
                "P26662"
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Protein Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-03-13T14:12:07.407873\n\nModified on\n   - 2024-05-17T11:23:57.472Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Citations dataset contains publication information for Hepatitis C virus (isolate Japanese) [taxid:11116] UniProtKB accessions that includes PMID, journal name, date and author and title. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: hcv1b_protein_function_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_function_uniprotkb.csv\n      Name: hcv1b_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_ptm_annotation_uniprotkb.csv\n      Name: hcv1b_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_site_annotation_uniprotkb.csv\n      Name: uniprot-proteome-hepatitis-c-virus-1b.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-hepatitis-c-virus-1b.nt\n   Output Subdomain\n      Name: hcv1b_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_citations_uniprotkb.csv\n      Name: hcv1b_protein_citations_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_citations_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hcv1b_protein_citations_uniprotkb.csv"
}