{
    "bcoid": "GLY_000285",
    "title": "Glycan Citations (GlyTouCan)",
    "description": "The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlyTouCan and UniCarbKB ...",
    "filename_list": "glycan_citations_glytoucan.csv",
    "filename": "glycan_citations_glytoucan.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Citations"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Sus scrofa domesticus",
            "Rattus norvegicus",
            "Rattus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa",
            "Dictyostelium discoideum",
            "Saccharomyces cerevisiae",
            "Hepatitis C virus (isolate H77)",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepacivirus C"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00008SX...",
                "Unlocking Ca..."
            ],
            [
                "G00025AJ...",
                "Fractionatio..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "G00008SX",
                "Unlocking Cancer Glycomes from Histopathological Formalin-fixed and Paraffin-embedded (FFPE) Tissue Microdissections.",
                "Molecular & cellular proteomics : MCP",
                "2017-04",
                "Hinneburg Hannes, Kora\u0107 Petra, Schirmeister Falko, Gasparov Slavko, Seeberger Peter H, Zoldo\u0161 Vlatka, Kolarich Daniel",
                "glycan_xref_pubmed",
                "28122943",
                "glycan_xref_glytoucan",
                "G00008SX"
            ],
            [
                "G00025AJ",
                "Fractionation of L-fucose-containing oligosaccharides on immobilized Aleuria aurantia lectin.",
                "The Journal of biological chemistry",
                "1985-04-25",
                "Yamashita K, Kochibe N, Ohkura T, Ueda I, Kobata A",
                "glycan_xref_pubmed",
                "3988732",
                "glycan_xref_glytoucan",
                "G00025AJ"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Citations (GlyTouCan)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-11-13T13:26:29.074237\n\nModified on\n   - 2024-05-17T11:23:54.981Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides citations for the associated glycan (GlyTouCan Accession) from GlyTouCan and UniCarbKB database.The listed GlyTouCan Accessions are derived from the  GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/; http://www.unicarbkb.org/\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - Citations\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: glycan_species.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_species.csv\n      Name: glycan_species_customized_neuac_neugc.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_species_customized_neuac_neugc.csv\n      Name: pubs.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2026_07_27/export/pubs.tsv\n   Output Subdomain\n      Name: glycan_citations_glytoucan.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_citations_glytoucan.csv\n      Name: glycan_citations_glytoucan.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_citations_glytoucan.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\"\n     Description: \"\"\n      Unique Values: \"7540\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/glycan_citations_glytoucan.csv"
}