{
    "bcoid": "GLY_000278",
    "title": "Rat EBI-UniProtKB NT file",
    "description": "The Rat EBI-UniProtKB NT dataset contains proteome data for Rattus norvegicus [taxid:10116] from UniProtKB ...",
    "filename_list": "rat_protein_ntdata.nt",
    "filename": "rat_protein_ntdata.nt",
    "filetype": "nt",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "EMBL-EBI-GlyGen-NT File"
        ],
        "file_type": [
            "nt"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "ntdata"
        ]
    },
    "iconfilename": "nt_icon_all.png",
    "sampledata": {
        "type": "text",
        "data": "<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Protein> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/version> \"64\"^^<http://www.w3.org/2001/XMLSchema#integer> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/created> \"2014-11-26\"^^<http://www.w3.org/2001/XMLSchema#date> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/modified> \"2026-06-10\"^^<http://www.w3.org/2001/XMLSchema#date> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/mnemonic> \"A0A096MIY3_RAT\" .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/reviewed> \"false\"^^<http://www.w3.org/2001/XMLSchema#boolean> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/existence> <http://purl.uniprot.org/core/Evidence_at_Protein_Level_Existence> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/organism> <http://purl.uniprot.org/taxonomy/10116> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/recommendedName> <http://purl.uniprot.org/uniprot/A0A096MIY3#SIPEA7EB9A3DDE55C85> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/alternativeName> <http://purl.uniprot.org/uniprot/A0A096MIY3#SIP048B272086AA714D> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/encodedBy> <http://purl.uniprot.org/uniprot/A0A096MIY3#gene-MD52D7963E3D15313723181DC306CB55295> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/A0A096MIY3-1> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/A0A096MK32-1> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/A0ABK0LCB1-1> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/A0ABK0M2S8-1> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/10> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/156> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/234> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/378> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/1017> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/539> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/1267> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/1185> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/805> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/832> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0005654> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0005634> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0016605> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0005524> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0031404> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0003677> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0019104> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0140297> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0003690> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0141016> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0043739> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0000287> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0030983> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0003676> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0019904> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0005080> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0008263> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0031402> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0032183> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0003712> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0004844> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0006284> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0006285> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0006351> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0040029> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0000122> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/uniprot/#_kb.A0A096MIY3_up.classifiedWith_obo.GO_0045995> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/enzyme> <http://purl.uniprot.org/enzyme/3.2.2.29> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/pfam/PF03167> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/refseq/NP_001375432.1> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/alphafolddb/A0A096MIY3> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/smr/A0A096MIY3> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/string/10116.ENSRNOP00000067921> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/paxdb/10116-ENSRNOP00000067921> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/geneid/114521> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/kegg/rno:114521> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/agr/RGD:620959> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/ctd/6996> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/rgd/620959> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/eggnog/KOG4120> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/genetree/ENSGT00390000000987> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/inparanoid/A0A096MIY3> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/bgee/ENSRNOG00000027124> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/expressionatlas/A0A096MIY3> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/cdd/cd10028> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/funfam/3.40.470.10:FF:000002> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/gene3d/3.40.470.10> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/interpro/IPR015637> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/interpro/IPR003310> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/interpro/IPR005122> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/interpro/IPR036895> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/ncbifam/TIGR00584> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/panther/PTHR12159> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/panther/PTHR12159:SF9> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://www.w3.org/2000/01/rdf-schema#seeAlso> <http://purl.uniprot.org/supfam/SSF52141> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/annotation> <http://purl.uniprot.org/uniprot/A0A096MIY3#SIP440CEEBFD6022728> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/annotation> <http://purl.uniprot.org/uniprot/A0A096MIY3#SIP52181EB6779C6B9D> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/annotation> <http://purl.uniprot.org/uniprot/A0A096MIY3#SIPB1309CCB59D7A7D9> .\n<http://purl.uniprot.org/uniprot/A0A096MIY3> <http://purl.uniprot.org/core/annotation> <http://purl.uniprot.org/uniprot/A0A096MIY3#SIPC8E629A49CBAEB39> .\n<http://purl.uniprot.org/taxonomy/10116> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Taxon> .\n<http://purl.uniprot.org/taxonomy/10116> <http://purl.uniprot.org/core/scientificName> \"Rattus norvegicus\" .\n<http://purl.uniprot.org/taxonomy/10116> <http://purl.uniprot.org/core/commonName> \"Rat\" .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.uniprot.org/core/Protein> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/version> \"66\"^^<http://www.w3.org/2001/XMLSchema#integer> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/created> \"2014-11-26\"^^<http://www.w3.org/2001/XMLSchema#date> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/modified> \"2026-06-10\"^^<http://www.w3.org/2001/XMLSchema#date> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/mnemonic> \"A0A096MJ70_RAT\" .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/reviewed> \"false\"^^<http://www.w3.org/2001/XMLSchema#boolean> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/existence> <http://purl.uniprot.org/core/Predicted_Existence> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/organism> <http://purl.uniprot.org/taxonomy/10116> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/recommendedName> <http://purl.uniprot.org/uniprot/A0A096MJ70#SIPD2CAFECB316DDC70> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/encodedBy> <http://purl.uniprot.org/uniprot/A0A096MJ70#gene-MD5CDEEE0FF8F4AE45CB4466A4A33506963> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/A0A096MJ70-1> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/sequence> <http://purl.uniprot.org/isoforms/A0A096MKA6-1> .\n<http://purl.uniprot.org/uniprot/A0A096MJ70> <http://purl.uniprot.org/core/classifiedWith> <http://purl.uniprot.org/keywords/1017> .\n"
    },
    "readme": "Name\n   - Rat EBI-UniProtKB NT file\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-09-06T17:38:32.808468\n\nModified on\n   - 2024-05-17T11:23:54.704Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat EBI-UniProtKB NT dataset contains proteome data for Rattus norvegicus [taxid:10116] from UniProtKB and other EMBL-EBI resources as per the GlyGen specifications in the NT format. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - NT\n   - proteome\n   - EMBL-EBI\n\n   Pipeline Steps\n   - Step-0: The NT file requires no processing after it is recieved from EMBL-EBI-UniProtKB\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_ntdata.nt\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_ntdata.nt\n      Name: rat_protein_ntdata.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_ntdata.stat.csv\n\nFields\n      Name: \"triple\"\n     Description: \"RDF triple\"\n      Unique Values: \"13340473\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_protein_ntdata.nt"
}