{
    "bcoid": "GLY_000136",
    "title": "Mouse Transcript Locus (Ensembl Transcript coordinates)",
    "description": "The Mouse Transcript Locus (Ensembl Transcript coordinates) contains UniProtKB Mus musculus [taxid:10090] ...",
    "filename_list": "mouse_protein_transcriptlocus.csv",
    "filename": "mouse_protein_transcriptlocus.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Transcript Coordinates"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "locus"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8VCK6-1...",
                "A0A087WQJ1-1..."
            ],
            [
                "Q8VCK6-1...",
                "Q8VCK6-1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "uniprotkb_is..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_isoform_ac"
                },
                {
                    "type": "string",
                    "label": "transcript_id"
                },
                {
                    "type": "string",
                    "label": "peptide_id"
                },
                {
                    "type": "string",
                    "label": "chromosome_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "strand"
                }
            ],
            [
                "Q8VCK6-1",
                "A0A087WQJ1-1",
                "ENSMUST00000186534.2",
                "ENSMUSP00000140215.2",
                "7",
                "30519538",
                "30519113",
                "1"
            ],
            [
                "Q8VCK6-1",
                "Q8VCK6-1",
                "ENSMUST00000163504.8",
                "ENSMUSP00000127758.2",
                "7",
                "30519538",
                "30518549",
                "1"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Transcript Locus (Ensembl Transcript coordinates)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-03-16T16:06:41.833239\n\nModified on\n   - 2024-05-17T11:23:52.363Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Transcript Locus (Ensembl Transcript coordinates) contains UniProtKB Mus musculus [taxid:10090] canonical accessions mapped to their isoforms with further mapping to the corresponding ENSEMBL Transcript ID, Peptide ID, chromosome ID along with the transcripts' start and end positions. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - transcript locus\n   - ensembl transcript id\n   - ensembl peptide id\n   - chromosome\n   - Ensembl\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB accessions that are mapped to UniProtKB isoforms and ENSEMBL Transcript and Peptide identifiers from the triplestore containing triples from nt file and maps it to the UniProtKB canonical accession to finally extract the data as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_transcriptlocus.csv\n      Name: mouse_protein_transcriptlocus.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_transcriptlocus.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"20378\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_protein_transcriptlocus.csv"
}