{
    "bcoid": "GLY_000092",
    "title": "Human UniProtKB Xref BioMuta",
    "description": "The Human UniprotKB Xref BioMuta contains Homo sapiens [taxid:9606] UniProtKB canonical accessions cross-referenced ...",
    "filename_list": "human_protein_xref_biomuta.csv",
    "filename": "human_protein_xref_biomuta.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Biomuta"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "xref_"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DMQ9-1...",
                "protein_xref..."
            ],
            [
                "P0CG36-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P0DMQ9-1",
                "protein_xref_biomuta",
                "P0DMQ9",
                ""
            ],
            [
                "P0CG36-1",
                "protein_xref_biomuta",
                "P0CG36",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human UniProtKB Xref BioMuta\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-03-15T11:44:11.813164\n\nModified on\n   - 2024-12-10T16:59:08.732Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human UniprotKB Xref BioMuta contains Homo sapiens [taxid:9606] UniProtKB canonical accessions cross-referenced to BioMuta database accessions/identifiers. BioMuta is a single-nucleotide variation (SNV) and disease association database where variations are mapped to genomes and RefSeq nucleotide entries, and unified through UniProtKB/Swiss-Prot positional coordinates. The current version of BioMuta contains only nonsynonymous single-nucleotide variations (nsSNVs) associated with cancer. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - mutation\n   - BioMuta\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to BioMuta database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_mutation_cancer.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_mutation_cancer.csv\n   Output Subdomain\n      Name: human_protein_xref_biomuta.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_xref_biomuta.csv\n      Name: human_protein_xref_biomuta.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_xref_biomuta.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"19268\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_xref_biomuta.csv"
}