{
    "bcoid": "GLY_000053",
    "title": "Human Protein Isoform sequences (UniProtKB)",
    "description": "The Human Protein Isoform sequences (UniProtKB) dataset contains Homo sapiens [taxid:9606] protein fasta ...",
    "filename_list": "human_protein_allsequences.fasta",
    "filename": "human_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "All Protein Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "sequence"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0A087WUN2-1|CH089_HUMAN Isoform 1 of Putative uncharacterized protein C8orf89 OS=Homo sapiens OX=9606 GN=C8orf89 PE=2 SV=2 CANONICAL=P0DMQ9-1\nMSVLSPEIKCETSKFTRSSFGSCLIFESSWKKAVLETQKIKKEYTTAFGLEELKECIKMP\nYLPGLQSCQKSAKED\n\n\n>sp|P0DMQ9-1|CH089_HUMAN Isoform 1 of Putative uncharacterized protein C8orf89 OS=Homo sapiens OX=9606 GN=C8orf89 PE=2 SV=1 CANONICAL=P0DMQ9-1\nMSVLSPEIKCETSKFTRSSFGSCLIFESSWKKAVLETQKIKKEYTTAFGLEELKECIKMP\nYLPGLQSCQKSVSSTPLEVPKRLPRADAEVSAVRLKKTKETCSVAPLWEKSKGSGFSDPL\nTGAPSQYLERLSKIAILEYDTIRQETTTKSKKSKKRDLRDR\n\n\n>tr|A0A096LNS9-1|CH089_HUMAN Isoform 1 of Putative uncharacterized protein C8orf89 OS=Homo sapiens OX=9606 GN=C8orf89 PE=2 SV=1 CANONICAL=P0DMQ9-1\nMSVLSPEIKCETSKFTRSSFGSCLIFESSWKKAVLETQKIKKEYTTAFGLEELKECIKMP\nYLPGLQSCQKSVSSTPLEVPKRLPRADAEVSAVRFWLQ\n\n\n>tr|A0A087X0G3-1|CFC1B_HUMAN Isoform 1 of Cryptic family protein 1B OS=Homo sapiens OX=9606 GN=CFC1B PE=3 SV=1 CANONICAL=P0CG36-1\nMTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE\nVTGSAEGWGPEEPLPYSWAFGEVNAAPWSTEPGPSAPATSAGASSGPCTASPSRRLTAVT\nRKTSWPPTLTGRAPGARPACYSCCPAHSCTASCARMRPRTLGPWSLPSSSGSGAPAEGRD\nLGIAFNFLCCK\n\n\n>sp|P0CG36-1|CFC1B_HUMAN Isoform 1 of Cryptic family protein 1B OS=Homo sapiens OX=9606 GN=CFC1B PE=3 SV=1 CANONICAL=P0CG36-1\nMTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE\nVTGSAEGWGPEEPLPYSWAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQRR\nSECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCDPKDFLASHAHGPSAGGAPSLLL\nLLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL\n\n\n>tr|A0A087WWE4-1|CFC1B_HUMAN Isoform 1 of Cryptic family protein 1B OS=Homo sapiens OX=9606 GN=CFC1B PE=3 SV=1 CANONICAL=P0CG36-1\nMTWRHHVRLLFTVSLALQIINLGNSYQREKHNGGREEVTKVATQKHRQSPLNWTSSHFGE\nVTGSAEGWGPEEPLPYSWAFGEDPKDFLASHAHGPSAGGAPSLLLLLPCALLHRLLRPDA\nPAHPRSLVPSVLQRERRPCGRPGLGHRL\n\n\n>sp|A1L170-1|CA226_HUMAN Isoform 1 of Uncharacterized protein C1orf226 OS=Homo sapiens OX=9606 GN=C1orf226 PE=1 SV=1 CANONICAL=A1L170-1\nMFENLNTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGA\nKVNDFLRRKEPSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPP\nPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEAT\nMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPIS\nLAESWEDGSPPPQARTSSLDNEGPHPDLLSFE\n\n\n>sp|A1L170-2|CA226_HUMAN Isoform 2 of Uncharacterized protein C1orf226 OS=Homo sapiens OX=9606 GN=C1orf226 PE=1 SV=1 CANONICAL=A1L170-1\nMLVLVAQAGGDTLKVTGHYVKCVFLLFVSHLLSEPLSRTVDHGMFENLNTALTPKLQASR\nSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDFLRRKEPSSLGSV\nGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDM\nLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSL\nSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTS\nSLDNEGPHPDLLSFE\n\n\n>sp|A6NCI8-1|CB078_HUMAN Isoform 1 of Uncharacterized protein C2orf78 OS=Homo sapiens OX=9606 GN=C2orf78 PE=2 SV=3 CANONICAL=A6NCI8-1\nMHWLASATQTSASIVSSSLLSAVDVSSSLTMSEYFQNTSLPGTANSRQFSLPVVSNAAFL\nTGSISNFSRASAPAISSAWLQPSASGTSFQPLMGSAYLYQHSSTTMLSGVTGQSHICTSA\nASYPGVFEWDSTASTVKKSSSLRDFTVTVIDQNTAVSSMSMTAQYYKTSDTNTMVPLYPS\nLSASLVQGTLTQIPNQQGHNLSLPCQIGSQVYYYNQGTLGPQLSCLQSYGSVSYTGYRAS\nAHQPEMVMVLKEVQPTNVLPPVSTSGMYYSVSSQPITETSVQVMETSLGMDTSLGLQSPS\nQTFCLPQTPEFSKSFSSRNTQTLESNPSPELGDISITPVQSPTNLLTLSPAPSQEKNENE\nNLDEIKTNLSKPLDVHQILIGNQDPPLLPVEIPDIHPLLACIDPLGQEEQPGSENANLRN\nKSLSLEDQGIFENGIESSSDLADITTWVEDTYLPPIFSSLQDLDQPESPSAKKAKDTSAI\nKVNQVQEKSCVIKGHSDQVRKNKHKASEPIQGAPKAKIQPKNPECLLEREVVVGSATVSN\nSASVNKAKHSSNKPHKAASSRISKTKSHGQEKTKGNRKNSSKKSEESKQSGKKVKVEEKQ\nTIPNMKRKKNQPELSQKTLKKPRSSLGMHMLESVQVFHALGKKIDMKTGFSSSRTLGSSS\nNTQNRQPFPALKPWLDIQHEGKGPEKIQVKAQKLDGSAEKECTSPSHSELPPPGKVKLIP\nLPFLTLDQPQARHVSRRPNPLASRRPAVAYPARPDSTNSAQSNAVNPSRPAPTNTSLTGP\nATPAQPISAKATQPSSANPTQPTVPQSAASRPSAYKTSSCSSLQREPVSTAVTSLRSLPK\nPQNQFLIQDFSLQPRPWRKPTVPEPVMSTPITEEQRPEREAMKRKAQQERENAAKYTSLG\nKVQFFIERERDMEIAEYYGYTI\n\n\n</pre>"
    },
    "readme": "Name\n   - Human Protein Isoform sequences (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-01-23T17:21:05.921192\n\nModified on\n   - 2024-05-17T11:23:50.305Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human Protein Isoform sequences (UniProtKB) dataset contains Homo sapiens [taxid:9606] protein fasta sequences for the human isoform accessions from the UniProtKB database,. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all human isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-homo-sapiens.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-homo-sapiens.nt\n   Output Subdomain\n      Name: human_protein_allsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_allsequences.fasta\n      Name: human_protein_allsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"100608\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_allsequences.fasta"
}