{
    "bcoid": "GLY_001732",
    "title": "Yeast Gene Groups",
    "description": "The Yeast Gene Groups dataset contains Saccharomyces cerevisiae S288C [taxid:559292] UniProtKB accessions ...",
    "filename_list": "yeast_protein_gene_groups.csv",
    "filename": "yeast_protein_gene_groups.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Gene Groups"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "others"
        ]
    },
    "minitable": {
        "content": [
            [
                "P00724-1...",
                "GlycoGene, G..."
            ],
            [
                "P06738-1...",
                "GlycoGene, G..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_group..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_group"
                }
            ],
            [
                "P00724-1",
                "GlycoGene, Glycosylhydrolase"
            ],
            [
                "P06738-1",
                "GlycoGene, Glycosyltransferase"
            ]
        ]
    },
    "readme": "Name\n   - Yeast Gene Groups\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast Gene Groups dataset contains Saccharomyces cerevisiae S288C [taxid:559292] UniProtKB accessions that have been identified as potential proteins of interest for our users. Proteins are categorized into gene groups to enable identification and the 'Protein of Interest' filters on the protein list page of the GlyGen portal. The subcategories include all proteins in GlyGen defined as 'Glycosylhydrolases', 'Glycosyltransferases', or 'Glycan-modifying enzymes' by CAZy, and/or its enzyme classification in UniProtKB. The parent category 'GlycoGenes' encompasses the subcategories 'Glycosylhydrolases', 'Glycosyltransferases', and 'Glycan-modifying enzymes'. If you use this dataset, please provide proper attribution to UniProtKB, GlyGen, and CAZy.\n\nDescription Domain\n   Keywords\n   - Gene groups\n   - GlycoGenes\n   - Glycosyltransferases\n   - Glycosylhydrolases\n   - Glycan-modifying enzymes\n\n   Pipeline Steps\n   - Step-1: The script extracts proteins of interest from the input datasets, maps them to the canonical UniProtKB canonical protein, and adds the gene_group categories of each protein. Added gene groups include the parent category GlycoGene, which contains the subcategories Glycosyltransferases, Glycosylhydrolases, and Glycan-modifying enzymes.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_protein_gene_groups.csv\n      URI: https:/data.glygen.org/ln2downloads/gene_groups/2026_08_19/yeast_protein_gene_groups.csv\n   Output Subdomain\n      Name: yeast_protein_gene_groups.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_gene_groups.csv\n      Name: yeast_protein_gene_groups.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_protein_gene_groups.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"105\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/yeast_protein_gene_groups.csv"
}