{
    "bcoid": "GLY_001707",
    "title": "Mouse Domains and Regions Citations (UniProtKB)",
    "description": "The Mouse domain and regions citations (UniProtKB) dataset contains Mus musculus [taxid:10090] publication ...",
    "filename_list": "mouse_protein_citations_domains_uniprotkb.csv",
    "filename": "mouse_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "O35309-1...",
                "Negative reg..."
            ],
            [
                "O35954-1...",
                "Nir2 crystal..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "O35309-1",
                "Negative regulation of Nmi on virus-triggered type I IFN production by targeting IRF7.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2013 Sep 15",
                "Wang J, Yang B, Hu Y, Zheng Y, Zhou H, Wang Y, Ma Y, Mao K, Yang L, Lin G, Ji Y, Wu X, Sun B",
                "protein_xref_pubmed",
                "23956435",
                "protein_xref_uniprotkb",
                "O35309"
            ],
            [
                "O35954-1",
                "Nir2 crystal structures reveal a phosphatidic acid-sensing mechanism at ER-PM contact sites.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2025-10-28",
                "Kim Dongyoung, Lee Seowhang, Jun Youngsoo, Lee Changwook",
                "protein_xref_pubmed",
                "41129229",
                "protein_xref_uniprotkb",
                "O35954"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse domain and regions citations (UniProtKB) dataset contains Mus musculus [taxid:10090] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: mouse_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_citations_domains_uniprotkb.csv\n      Name: mouse_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"174\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_protein_citations_domains_uniprotkb.csv"
}