{
    "bcoid": "GLY_001703",
    "title": "HCV1b Domains and Regions Citations (UniProtKB)",
    "description": "The HCV1b domain and regions citations (UniProtKB) dataset contains Hepatitis C virus (isolate Japanese) ...",
    "filename_list": "hcv1b_protein_citations_domains_uniprotkb.csv",
    "filename": "hcv1b_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis C virus (isolate Japanese)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "Regulation o..."
            ],
            [
                "P26662-1...",
                "Cleavage of ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P26662-1",
                "Regulation of hepatitis C virus replication by nuclear translocation of nonstructural 5A protein and transcriptional activation of host genes.",
                "Journal of virology",
                "2013 May",
                "Maqbool MA, Imache MR, Higgs MR, Carmouse S, Pawlotsky JM, Lerat H",
                "protein_xref_pubmed",
                "23468497",
                "protein_xref_uniprotkb",
                "P26662"
            ],
            [
                "P26662-1",
                "Cleavage of hepatitis C virus nonstructural protein 5A by a caspase-like protease(s) in mammalian cells.",
                "Virology",
                "2000 May 10",
                "Satoh S, Hirota M, Noguchi T, Hijikata M, Handa H, Shimotohno K",
                "protein_xref_pubmed",
                "10793006",
                "protein_xref_uniprotkb",
                "P26662"
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The HCV1b domain and regions citations (UniProtKB) dataset contains Hepatitis C virus (isolate Japanese) [taxid:11116] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1b_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: hcv1b_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_citations_domains_uniprotkb.csv\n      Name: hcv1b_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1b_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hcv1b_protein_citations_domains_uniprotkb.csv"
}