{
    "bcoid": "GLY_001694",
    "title": "Dicty Domains and Regions Citations (UniProtKB)",
    "description": "The Dicty domain and regions citations (UniProtKB) dataset contains Dictyostelium discoideum [taxid:44689] ...",
    "filename_list": "dicty_protein_citations_domains_uniprotkb.csv",
    "filename": "dicty_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q54FI3-1...",
                "Biosynthesis..."
            ],
            [
                "Q54HI5-1...",
                "Characteriza..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q54FI3-1",
                "Biosynthesis of Dictyostelium discoideum differentiation-inducing factor by a hybrid type I fatty acid-type III polyketide synthase.",
                "Nature chemical biology",
                "2006-09",
                "Austin Michael B, Saito Tamao, Bowman Marianne E, Haydock Stephen, Kato Atsushi, Moore Bradley S, Kay Robert R, Noel Joseph P",
                "protein_xref_pubmed",
                "16906151",
                "protein_xref_uniprotkb",
                "Q54FI3"
            ],
            [
                "Q54HI5-1",
                "Characterization of NE81, the first lamin-like nucleoskeleton protein in a unicellular organism.",
                "Molecular biology of the cell",
                "2012-01",
                "Kr\u00fcger Anne, Batsios Petros, Baumann Otto, Luckert Eva, Schwarz Heinz, Stick Reimer, Meyer Irene, Gr\u00e4f Ralph",
                "protein_xref_pubmed",
                "22090348",
                "protein_xref_uniprotkb",
                "Q54HI5"
            ]
        ]
    },
    "readme": "Name\n   - Dicty Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty domain and regions citations (UniProtKB) dataset contains Dictyostelium discoideum [taxid:44689] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: dicty_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: dicty_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_citations_domains_uniprotkb.csv\n      Name: dicty_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"3\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/dicty_protein_citations_domains_uniprotkb.csv"
}