{
    "bcoid": "GLY_001690",
    "title": "Bovine Domains and Regions Citations (UniProtKB)",
    "description": "The Bovine domain and regions citations (UniProtKB) dataset contains Bos taurus [taxid:9913] publication ...",
    "filename_list": "bovine_protein_citations_domains_uniprotkb.csv",
    "filename": "bovine_protein_citations_domains_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Domains and Regions Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0AAA9T569-1...",
                "Structural b..."
            ],
            [
                "P28327-1...",
                "Structures o..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0AAA9T569-1",
                "Structural basis of prostaglandin efflux by MRP4.",
                "Nature structural & molecular biology",
                "2024-04",
                "Pourmal Sergei, Green Evan, Bajaj Ruchika, Chemmama Ilan E, Knudsen Giselle M, Gupta Meghna, Sali Andrej, Cheng Yifan, Craik Charles S, Kroetz Deanna L, Stroud Robert M",
                "protein_xref_pubmed",
                "38216659",
                "protein_xref_uniprotkb",
                "A0AAA9T569"
            ],
            [
                "P28327-1",
                "Structures of rhodopsin kinase in different ligand states reveal key elements involved in G protein-coupled receptor kinase activation.",
                "The Journal of biological chemistry",
                "2008-05-16",
                "Singh Puja, Wang Benlian, Maeda Tadao, Palczewski Krzysztof, Tesmer John J G",
                "protein_xref_pubmed",
                "18339619",
                "protein_xref_uniprotkb",
                "P28327"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Domains and Regions Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine domain and regions citations (UniProtKB) dataset contains Bos taurus [taxid:9913] publication information for UniProtKB canonical protein domains, motifs and DNA binding regions provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - domains\n   - motifs\n   - regions\n   - DNA binding\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the domain, motif or nucleotide binding annotation triples then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: bovine_protein_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_domains_uniprotkb.csv\n   Output Subdomain\n      Name: bovine_protein_citations_domains_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_domains_uniprotkb.csv\n      Name: bovine_protein_citations_domains_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_domains_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"8\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bovine_protein_citations_domains_uniprotkb.csv"
}