{
    "bcoid": "GLY_001679",
    "title": "SARS-CoV1 Binding Sites Citations (UniProtKB)",
    "description": "The SARS-CoV1 binding sites citations (UniProtKB) dataset contains Severe acute respiratory syndrome-related ...",
    "filename_list": "sarscov1_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "sarscov1_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome-related coronavirus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0C6X7-1...",
                "Biochemical ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P0C6X7-1",
                "Biochemical and structural insights into the mechanisms of SARS coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex.",
                "PLoS pathogens",
                "2011 Oct",
                "Chen Y, Su C, Ke M, Jin X, Xu L, Zhang Z, Wu A, Sun Y, Yang Z, Tien P, Ahola T, Liang Y, Liu X, Guo D",
                "protein_xref_pubmed",
                "22022266",
                "protein_xref_uniprotkb",
                "P0C6X7"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS-CoV1 binding sites citations (UniProtKB) dataset contains Severe acute respiratory syndrome-related coronavirus [taxid:694009] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov1_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: sarscov1_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_protein_citations_binding_sites_uniprotkb.csv\n      Name: sarscov1_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov1_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/sarscov1_protein_citations_binding_sites_uniprotkb.csv"
}