{
    "bcoid": "GLY_001665",
    "title": "Hamster Binding Sites Citations (UniProtKB)",
    "description": "The Hamster binding sites citations (UniProtKB) dataset contains Cricetulus griseus [taxid:10029] publication ...",
    "filename_list": "hamster_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "hamster_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Cricetulus griseus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "G3I8R9-1...",
                "AMPylation t..."
            ],
            [
                "P12269-1...",
                "Structure an..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "G3I8R9-1",
                "AMPylation targets the rate-limiting step of BiP's ATPase cycle for its functional inactivation.",
                "eLife",
                "2017-10-24",
                "Preissler Steffen, Rohland Lukas, Yan Yahui, Chen Ruming, Read Randy J, Ron David",
                "protein_xref_pubmed",
                "29064368",
                "protein_xref_uniprotkb",
                "G3I8R9"
            ],
            [
                "P12269-1",
                "Structure and mechanism of inosine monophosphate dehydrogenase in complex with the immunosuppressant mycophenolic acid.",
                "Cell",
                "1996-06-14",
                "Sintchak M D, Fleming M A, Futer O, Raybuck S A, Chambers S P, Caron P R, Murcko M A, Wilson K P",
                "protein_xref_pubmed",
                "8681386",
                "protein_xref_uniprotkb",
                "P12269"
            ]
        ]
    },
    "readme": "Name\n   - Hamster Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Hamster binding sites citations (UniProtKB) dataset contains Cricetulus griseus [taxid:10029] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hamster_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: hamster_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_citations_binding_sites_uniprotkb.csv\n      Name: hamster_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hamster_protein_citations_binding_sites_uniprotkb.csv"
}