{
    "bcoid": "GLY_001658",
    "title": "Dicty Binding Sites Citations (UniProtKB)",
    "description": "The Dicty binding sites citations (UniProtKB) dataset contains Dictyostelium discoideum [taxid:44689] ...",
    "filename_list": "dicty_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "dicty_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "O96759-1...",
                "The crucial ..."
            ],
            [
                "P20425-1...",
                "Structures o..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "O96759-1",
                "The crucial step in ether phospholipid biosynthesis: structural basis of a noncanonical reaction associated with a peroxisomal disorder.",
                "Structure (London, England : 1993)",
                "2007-06",
                "Razeto Adelia, Mattiroli Francesca, Carpanelli Elena, Aliverti Alessandro, Pandini Vittorio, Coda Alessandro, Mattevi Andrea",
                "protein_xref_pubmed",
                "17562315",
                "protein_xref_uniprotkb",
                "O96759"
            ],
            [
                "P20425-1",
                "Structures of active conformations of UMP kinase from Dictyostelium discoideum suggest phosphoryl transfer is associative.",
                "Biochemistry",
                "1997-08-05",
                "Schlichting I, Reinstein J",
                "protein_xref_pubmed",
                "9280438",
                "protein_xref_uniprotkb",
                "P20425"
            ]
        ]
    },
    "readme": "Name\n   - Dicty Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty binding sites citations (UniProtKB) dataset contains Dictyostelium discoideum [taxid:44689] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: dicty_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: dicty_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_citations_binding_sites_uniprotkb.csv\n      Name: dicty_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"5\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/dicty_protein_citations_binding_sites_uniprotkb.csv"
}