{
    "bcoid": "GLY_001656",
    "title": "Chicken Binding Sites Citations (UniProtKB)",
    "description": "The Chicken binding sites citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] publication ...",
    "filename_list": "chicken_protein_citations_binding_sites_uniprotkb.csv",
    "filename": "chicken_protein_citations_binding_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Binding sites citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A1D5PXA5-1...",
                "TRPV4 channe..."
            ],
            [
                "A0A8V1ABE9-1...",
                "Crystal stru..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A1D5PXA5-1",
                "TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P(2).",
                "Nature communications",
                "2014 Sep 26",
                "Takahashi N, Hamada-Nakahara S, Itoh Y, Takemura K, Shimada A, Ueda Y, Kitamata M, Matsuoka R, Hanawa-Suetsugu K, Senju Y, Mori MX, Kiyonaka S, Kohda D, Kitao A, Mori Y, Suetsugu S",
                "protein_xref_pubmed",
                "25256292",
                "protein_xref_uniprotkb",
                "A0A1D5PXA5"
            ],
            [
                "A0A8V1ABE9-1",
                "Crystal structure of a zinc-dependent D-serine dehydratase from chicken kidney.",
                "The Journal of biological chemistry",
                "2011-08-05",
                "Tanaka Hiroyuki, Senda Miki, Venugopalan Nagarajan, Yamamoto Atsushi, Senda Toshiya, Ishida Tetsuo, Horiike Kihachiro",
                "protein_xref_pubmed",
                "21676877",
                "protein_xref_uniprotkb",
                "A0A8V1ABE9"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Binding Sites Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken binding sites citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] publication information for UniProtKB canonical protein binding sites provided in GlyGen. The dataset includes PMID, journal name, date and author and title. If you use this dataset please give proper attribution to UniProtKB, ChEBI and GlyGen.\n\nDescription Domain\n   Keywords\n   - binding sites\n   - ligands\n   - metal binding sites\n   - calcium binding sites\n   - citations\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the Binding_Site_Annotation triple then accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_binding_sites_uniprotkb.csv\n   Output Subdomain\n      Name: chicken_protein_citations_binding_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_binding_sites_uniprotkb.csv\n      Name: chicken_protein_citations_binding_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_protein_citations_binding_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"31\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_protein_citations_binding_sites_uniprotkb.csv"
}