{
    "bcoid": "GLY_001644",
    "title": "Glycan Xref GlyTableMaker",
    "description": "This dataset provides cross-references to GlyTableMaker entries for the associated glycans (GlyTouCan ...",
    "filename_list": "glycan_xref_tablemaker.csv",
    "filename": "glycan_xref_tablemaker.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "GlyTableMaker cross-references"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens",
            "Mus musculus",
            "Arabidopsis thaliana",
            "Sus scrofa",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Danio rerio",
            "Dictyostelium discoideum",
            "Zaire ebolavirus (strain Mayinga-76)",
            "Bundibugyo virus",
            "Bos taurus",
            "Gallus gallus",
            "Cricetulus griseus"
        ],
        "file_category": [
            "xref_"
        ]
    },
    "minitable": {
        "content": [
            [
                "G09724ZC...",
                "TG10381046..."
            ],
            [
                "G87867IZ...",
                "TG10381046..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "xref_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                }
            ],
            [
                "G09724ZC",
                "TG10381046",
                "glycan_xref_tablemaker"
            ],
            [
                "G87867IZ",
                "TG10381046",
                "glycan_xref_tablemaker"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Xref GlyTableMaker\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-11-13T16:55:11.149043\n\nModified on\n   - 2024-05-17T11:23:55.326Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - This dataset provides cross-references to GlyTableMaker entries for the associated glycans (GlyTouCan Accession) that were manually curated on GlyTableMaker (https://glygen.ccrc.uga.edu/tablemaker)\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - GlyTableMaker\n   - Cross-references\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: bdbv_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_proteoform_glycosylation_sites_tablemaker.csv\n      Name: bovine_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_proteoform_glycosylation_sites_tablemaker.csv\n      Name: chicken_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_glycosylation_sites_tablemaker.csv\n      Name: dicty_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_proteoform_glycosylation_sites_tablemaker.csv\n      Name: ebov_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/ebov_proteoform_glycosylation_sites_tablemaker.csv\n      Name: fruitfly_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_proteoform_glycosylation_sites_tablemaker.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: hamster_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_proteoform_glycosylation_sites_tablemaker.csv\n      Name: human_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_glycosylation_sites_tablemaker.csv\n      Name: pig_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_proteoform_glycosylation_sites_tablemaker.csv\n      Name: zebrafish_proteoform_glycosylation_sites_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_glycosylation_sites_tablemaker.csv\n   Output Subdomain\n      Name: glycan_xref_tablemaker.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_xref_tablemaker.csv\n      Name: glycan_xref_tablemaker.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_xref_tablemaker.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\"\n     Description: \"\"\n      Unique Values: \"3479\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/glycan_xref_tablemaker.csv"
}