{
    "bcoid": "GLY_001582",
    "title": "Ebola (BDBV) Protein Citations (UniProtKB)",
    "description": "The Ebola (BDBV) Protein Citations dataset contains publication information for Bundibugyo virus [taxid:565995] ...",
    "filename_list": "bdbv_protein_citations_uniprotkb.csv",
    "filename": "bdbv_protein_citations_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bundibugyo virus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "B8XCM7-1...",
                "Molecular ar..."
            ],
            [
                "B8XCM7-1...",
                "The structur..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "B8XCM7-1",
                "Molecular architecture of the nucleoprotein C-terminal domain from the Ebola and Marburg viruses.",
                "Acta Crystallogr. D Struct. Biol.",
                "2016",
                "Derewenda Z.S., Derewenda U., Engel D.A., Handing K.B., Utepbergenov D., Ellena J.F., Baker L.E.",
                "protein_xref_pubmed",
                "26894534",
                "protein_xref_uniprotkb",
                "B8XCM7"
            ],
            [
                "B8XCM7-1",
                "The structure of the C-terminal domain of the nucleoprotein from the Bundibugyo strain of the Ebola virus in complex with a pan-specific synthetic Fab.",
                "Acta Crystallogr. D Struct. Biol.",
                "2018",
                "Kossiakoff A.A., Davydova E., Derewenda Z.S., Miyake T., Derewenda U., Engel D.A., Jaskolowski M., Radwanska M.J.",
                "protein_xref_pubmed",
                "29968677",
                "protein_xref_uniprotkb",
                "B8XCM7"
            ]
        ]
    },
    "readme": "Name\n   - Ebola (BDBV) Protein Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Ebola (BDBV) Protein Citations dataset contains publication information for Bundibugyo virus [taxid:565995] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: bdbv_protein_function_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_function_uniprotkb.csv\n      Name: bdbv_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_ptm_annotation_uniprotkb.csv\n      Name: bdbv_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_site_annotation_uniprotkb.csv\n      Name: uniprot-proteome-bundibugyo-virus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-bundibugyo-virus.nt\n   Output Subdomain\n      Name: bdbv_protein_citations_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_citations_uniprotkb.csv\n      Name: bdbv_protein_citations_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bdbv_protein_citations_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bdbv_protein_citations_uniprotkb.csv"
}