{
    "bcoid": "GLY_001434",
    "title": "Pig Protein Citations (IEDB)",
    "description": "The Pig Protein Citations (IEDB) dataset contains Sus scrofa [taxid:9823] UniProtKB accessions mapped ...",
    "filename_list": "pig_protein_citations_iedb.csv",
    "filename": "pig_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P00592-1...",
                "Epitope mapp..."
            ],
            [
                "P00592-1...",
                "Epitope mapp..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "P00592-1",
                "Epitope mapping of snake venom phospholipases A2 with pseudexin monoclonal antibodies.",
                "Journal of protein chemistry",
                "1991-04",
                "Stiles B G, Middlebrook J L",
                "protein_xref_pubmed",
                "1718309",
                "protein_xref_iedb",
                "102690"
            ],
            [
                "P00592-1",
                "Epitope mapping of snake venom phospholipases A2 with pseudexin monoclonal antibodies.",
                "Journal of protein chemistry",
                "1991-04",
                "Stiles B G, Middlebrook J L",
                "protein_xref_pubmed",
                "1718309",
                "protein_xref_iedb",
                "102943"
            ]
        ]
    },
    "readme": "Name\n   - Pig Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Protein Citations (IEDB) dataset contains Sus scrofa [taxid:9823] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: pig_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_iedb.csv\n   Output Subdomain\n      Name: pig_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_iedb.csv\n      Name: pig_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"9\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/pig_protein_citations_iedb.csv"
}