{
    "bcoid": "GLY_001428",
    "title": "Rat Protein Citations (IEDB)",
    "description": "The Rat Protein Citations (IEDB) dataset contains Rattus norvegicus [taxid:10116] UniProtKB accessions ...",
    "filename_list": "rat_protein_citations_iedb.csv",
    "filename": "rat_protein_citations_iedb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0A0G2JTI9-1...",
                "The Peptide ..."
            ],
            [
                "A0A0G2JTK1-1...",
                "The Peptide ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A0A0G2JTI9-1",
                "The Peptide Repertoire of HLA-B27 may include Ligands with Lysine at P2 Anchor Position.",
                "Proteomics",
                "2018-05",
                "Yair-Sabag Shira, Tedeschi Valentina, Vitulano Carolina, Barnea Eilon, Glaser Fabian, Melamed Kadosh Dganit, Taurog Joel D, Fiorillo Maria Teresa, Sorrentino Rosa, Admon Arie",
                "protein_xref_pubmed",
                "29393594",
                "protein_xref_iedb",
                "656527"
            ],
            [
                "A0A0G2JTK1-1",
                "The Peptide Repertoire of HLA-B27 may include Ligands with Lysine at P2 Anchor Position.",
                "Proteomics",
                "2018-05",
                "Yair-Sabag Shira, Tedeschi Valentina, Vitulano Carolina, Barnea Eilon, Glaser Fabian, Melamed Kadosh Dganit, Taurog Joel D, Fiorillo Maria Teresa, Sorrentino Rosa, Admon Arie",
                "protein_xref_pubmed",
                "29393594",
                "protein_xref_iedb",
                "667337"
            ]
        ]
    },
    "readme": "Name\n   - Rat Protein Citations (IEDB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu], Mariia Kim [maria.kim@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Citations (IEDB) dataset contains Rattus norvegicus [taxid:10116] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors, and the corresponding IEDB accession). If you use this dataset provide proper attribution to IEDB, GlyGen and EBI-EMBL-UniProtKB.\n   - The Immune Epitope Database (IEDB) catalogs experimental data on antibody and T cell epitopes in the context of infectious disease, allergy, autoimmunity and transplantation.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - PubMed\n   - IEDB\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_iedb.csv\n   Output Subdomain\n      Name: rat_protein_citations_iedb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_citations_iedb.csv\n      Name: rat_protein_citations_iedb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_citations_iedb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1122\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_protein_citations_iedb.csv"
}