{
    "bcoid": "GLY_001410",
    "title": "Zebrafish Glycan GlycomeAtlas",
    "description": "The Zebrafish Glycan GlycomeAtlas dataset comprises zebrafish [TaxID: 7955] tissue glycan information ...",
    "filename_list": "zebrafish_proteoform_glycosylation_sites_glycomeatlas.csv",
    "filename": "zebrafish_proteoform_glycosylation_sites_glycomeatlas.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycan Tissue Expression GlycomeAtlas"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Danio rerio"
        ],
        "file_category": [
            "glycosylation_sites_"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "..."
            ],
            [
                "...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "source_tissue_id"
                },
                {
                    "type": "string",
                    "label": "source_tissue_name"
                },
                {
                    "type": "string",
                    "label": "n_sequon"
                },
                {
                    "type": "string",
                    "label": "n_sequon_type"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "site_seq"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "",
                "",
                "",
                "G00211WY",
                "N-linked",
                "glycan_xref_doi",
                "10.1038/s41467-018-06950-3",
                "glycan_xref_glycomeatlas",
                "G00211WY",
                "UBERON:0000160",
                "intestine",
                "",
                "",
                "",
                "",
                "",
                "",
                "",
                ""
            ],
            [
                "",
                "",
                "",
                "G00211WY",
                "N-linked",
                "glycan_xref_doi",
                "10.1038/s41467-018-06950-3",
                "glycan_xref_glycomeatlas",
                "G00211WY",
                "UBERON:0002535",
                "gill",
                "",
                "",
                "",
                "",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Glycan GlycomeAtlas\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-03-14T20:00:08.127Z\n\nModified on\n   - 2025-03-04T15:53:49.509Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Glycan GlycomeAtlas dataset comprises zebrafish [TaxID: 7955] tissue glycan information for Danio rerio. This data is provided by the GlycomeAtlas from GlyCosmos which provides comprehensive information on glycan structures catalogued from various publications. More information can be found here: https://glycosmos.org/glycomeatlas.\n\nDescription Domain\n   Keywords\n   - GlycomeAtlas\n   - glycan\n   - proteoform\n\n   Pipeline Steps\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_classification.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_classification.csv\n      Name: glycan_add_class.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/glycan_add_class.csv\n      Name: n_sequon_info.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/n_sequon_info.csv\n      Name: sample_mapping.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/sample_mapping.csv\n      Name: glycosmos_glycomeatlas_list.csv\n      URI: https:/data.glygen.org/ln2downloads/glycosmos/2025_06_23/glycosmos_glycomeatlas_list.csv\n   Output Subdomain\n      Name: zebrafish_proteoform_glycosylation_sites_glycomeatlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_glycosylation_sites_glycomeatlas.csv\n      Name: zebrafish_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_proteoform_glycosylation_sites_glycomeatlas.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/zebrafish_proteoform_glycosylation_sites_glycomeatlas.csv"
}