{
    "bcoid": "GLY_001360",
    "title": "Hamster Protein PTM Annotation (UniProtKB)",
    "description": "The Hamster Protein PTM Annotation (UniProtKB) dataset contains Cricetulus griseus [taxid:10029] PTM ...",
    "filename_list": "hamster_protein_ptm_annotation_uniprotkb.csv",
    "filename": "hamster_protein_ptm_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Cricetulus griseus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PTM annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "G3I8R9-1...",
                "protein_xref..."
            ],
            [
                "G3I8R9-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "ptm_annotation"
                }
            ],
            [
                "G3I8R9-1",
                "protein_xref_uniprotkb",
                "G3I8R9",
                "ECO_0000269",
                "In unstressed cells, AMPylation at Thr-518 by FICD inactivates the chaperome activity: AMPylated form is locked in a relatively inert state and only weakly stimulated by J domain-containing proteins (PubMed:26673894, PubMed:27918543, PubMed:29064369, PubMed:29198525). In response to endoplasmic reticulum stress, de-AMPylation by the same protein, FICD, restores the chaperone activity (PubMed:27918543)."
            ],
            [
                "G3I8R9-1",
                "protein_xref_pubmed",
                "27918543",
                "ECO_0000269",
                "In unstressed cells, AMPylation at Thr-518 by FICD inactivates the chaperome activity: AMPylated form is locked in a relatively inert state and only weakly stimulated by J domain-containing proteins (PubMed:26673894, PubMed:27918543, PubMed:29064369, PubMed:29198525). In response to endoplasmic reticulum stress, de-AMPylation by the same protein, FICD, restores the chaperone activity (PubMed:27918543)."
            ]
        ]
    },
    "readme": "Name\n   - Hamster Protein PTM Annotation (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hamster Protein PTM Annotation (UniProtKB) dataset contains Cricetulus griseus [taxid:10029] PTM annotations for UniProtKB canonical accessions. The annotation is the curated statements of mainly about glycosylation and phosphorylation. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - ptm annotation\n   - glycosylation\n   - phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the ptm annotation strings from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-cricetulus-griseus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-cricetulus-griseus.nt\n   Output Subdomain\n      Name: hamster_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_ptm_annotation_uniprotkb.csv\n      Name: hamster_protein_ptm_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_protein_ptm_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"16\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hamster_protein_ptm_annotation_uniprotkb.csv"
}