{
    "bcoid": "GLY_001302",
    "title": "Hamster Proteoform Citations (GlyConnect)",
    "description": "The Hamster Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the ...",
    "filename_list": "hamster_proteoform_citations_glycosylation_sites_glyconnect.csv",
    "filename": "hamster_proteoform_citations_glycosylation_sites_glyconnect.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Cricetulus griseus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "A novel glyc..."
            ],
            [
                "...",
                "A novel glyc..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "",
                "A novel glycosylation phenotype expressed by Lec23, a Chinese hamster ovary mutant deficient in alpha-glucosidase I.",
                "The Journal of biological chemistry",
                "1991-12-05",
                "Ray M K, Yang J, Sundaram S, Stanley P",
                "protein_xref_pubmed",
                "1660460",
                "protein_xref_glyconnect",
                "843",
                "G94481KZ",
                ""
            ],
            [
                "",
                "A novel glycosylation phenotype expressed by Lec23, a Chinese hamster ovary mutant deficient in alpha-glucosidase I.",
                "The Journal of biological chemistry",
                "1991-12-05",
                "Ray M K, Yang J, Sundaram S, Stanley P",
                "protein_xref_pubmed",
                "1660460",
                "protein_xref_glyconnect",
                "843",
                "G57930PW",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Hamster Proteoform Citations (GlyConnect)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hamster Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329 for Cricetulus griseus [TaxID:10029]. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: hamster_proteoform_citations_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_proteoform_citations_glycosylation_sites_glyconnect.csv\n      Name: hamster_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hamster_proteoform_citations_glycosylation_sites_glyconnect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hamster_proteoform_citations_glycosylation_sites_glyconnect.csv"
}