{
    "bcoid": "GLY_001263",
    "title": "Zebrafish Protein Isoform sequences (UniProtKB)",
    "description": "The Zebrafish Protein Isoform sequences (UniProtKB) dataset contains Danio rerio [taxid:7955] protein ...",
    "filename_list": "zebrafish_protein_allsequences.fasta",
    "filename": "zebrafish_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "All Protein Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "sequence"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0AB32TMT8-1|A0AB32TMT8_DANRE Isoform 1 of Tripartite motif-containing protein 16-like OS=Danio rerio OX=7955 GN=LOC137491427 PE=4 SV=1 CANONICAL=A0AB32TMT8-1\nMIGGLQSCNLTVECCESLSSALQSSNCVLRELDLSNNDLQDSGVKKLSDGLKSPNCKLET\nLRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGVKLLSEQLEDPNYTLDKLN\nLDHGGETRITAGLHKYVCFLTLDPNTAHTQLILSEENREVKLVRENQPYPDHPDRFDGYY\nCRQVLCKESVCGRCYWEIDLSGDDVVCISVSYKSIRRKGGGVECVFGYNAQSWSLRCSSS\nRFSFIHNNTHTDLPVEPLSRRIGVFVDHSAGTLIFYNIYRDTMSLIHSVQTTFTEPLCAG\nFYVSYGSSVKLS\n\n\n>tr|A0AB32TMU3-1|A0AB32TMU3_DANRE Isoform 1 of Uncharacterized protein OS=Danio rerio OX=7955 GN=LOC110439297 PE=4 SV=1 CANONICAL=A0AB32TMU3-1\nMVQDTVIIEEGPDSKRMKLDDEAKKLVQSVLVKKPGGESIINEYNRTKALKDETRRKMVN\nILAADMTEKNGGSPPRLVKEKYARGIVALFPYLSDPYSKNGFEHYYDGESGTGYLAWRIK\nTIQRNLAKERRGSFEGQVSYAERGSGGPTVARHSKFTPEIVLSEDECKEAIAFMNHSADE\nDAIKKKMKLTFDYRRKMVLDPMQSSDLLTIFPRLKDIKGLVSVYNHI\n\n\n>tr|A0AB32TMU4-1|A0AB32TMU4_DANRE Isoform 1 of Interferon-induced very large GTPase 1 isoform X1 OS=Danio rerio OX=7955 GN=gvin1l PE=3 SV=1 CANONICAL=A0AB32TMU4-1\nMSFHRSEKHPQINQFPQTDGAHQTTEFPQSDKSPQTNESPQIDESLQTNESLQTDGSHQT\nTELLQTVQPPITIQSIHTDIFPQPLQAAGYHMTNEVTITIKLRNVPDSFTQSDLQISFSL\nANESQQTNQSPQKDGSSQKDASLQTGRYPLANESPKKDTSPQTKSAQKNEPTQTNESPNK\nFLHIKQSLQTNTFPDESPQINENPQTKQSPQINESLQTKQSSQTDRSLHTNEFLQTIESP\nKTDKYPQTNQSLQTEGSPQTDESAQTYGSPQSKGSLQTEGSLQKNESEQTEGSPQTEGSP\nQTDGSLQTDESPQTDESHQLGGCAQTDGSLQTDESSQTDGSRQTGGSRQTDGSPQTDRSA\nQAERSLQTDGSPQTNEFAQTEESSQTDGSPQADESAQTEGSPQTDESPQADGSAQTERSP\nHADESAQTEGSPQTDGSPQTGESAQTEGSPQTDGSPQTGESAQTEGSPQTDGSPQTGESA\nQTDGSPQTDEANEFLHTDESSWKNKSKTERSETEKTSQEQTSPSVQGSPGNAKDAVGEII\nSESTIRDSESNDSTKSQRKHTGKEEVGTDQNEQKKNTEKTEKLFQRLHLYRKDKLRAADV\nLQITKYTLQTVESCAEEELVPTFLQKLLMMDYRARYIQIKDAFKQQKTDTGSTSHGGDIF\nKAMSLYNKRPQQPERIDPMDVQMAVFHCADGFLKQMMVTKLSQCQYALPLLVPDPFTQQT\nEFSLWTFRKIAKSWKIRNTNNETISQTQPIYKAETPMVFFFRFGSVSSSKSHLMNSLINE\nKHNTFFHRNCAGSSRSRVLMDGVVEIAWFCPSGKDTDKFNNCVAFCNLHGDAGEHEKQMK\nILIEMASVNVVLLPQLDSNDRSAKIIQELFTNPKPLICLFTEDDSNIFELERKKFKIGLK\nYRNQSDVSEELRGAIQDCLLEASANFRLDAFKFSDIRVDEEDDEDCRRGREAAQQMIGLL\nDNKNLTEIKESFLPHQGKLWHQWCQKNKELHRPQGDEPDKIVSDKKTEMMNIRKQQHETD\nISEFMNHFIKTMDSHAKHKVFFLKWLTTLLDEHSSDDLSKLHNMYNTTWSMIVKLKEQKD\nNNNKPELKAKQAELEKISKDLQAAAFGLEHIMREISQIYESCSSVKEINKNLQVEPSPLP\nSLAAEMMISGFPLELMDGDAAHVPVVWVSAVLDQLVQQLKDQKVFVLSVLGIQSSGKSTM\nLNAMFGLQFAVSAGRCTRGAFMQLVKVSDEMKTEMNFDYILVVDTEGLRSLELAGKSTRG\nHDNELATFVIGLGNLTLINIFGENPSEMQDTLQIVVQAFMRMKKVRLYPSCVFVHQNVSD\nITAGEKNMEGRRKLQETLDEMTKLAAKDEVCDAERFSDVIKFDVQNDIKYFAQLWEGSPP\nMAPPNPNYCENVQELKKSIISHASKSQGIKLDDIKERINDLWEALLNERFVFSFRNSLEI\nSAYRKLETKYSKWSWTLRSVMLETENKLHNLIENENIHEVEETHLQFELKKRSEEVKNSM\nSEFFEKDTDVEILIQWKTSFVIKIKELQENIVRETKRKLNDILQQRGLKKKIDAQRTHHE\nNTLYEKSKELALKLKDKAKDEETLKKEFDAFWQQTVKNTIKDTPKIKDIDIMRDVRKLLH\nDNYGSVSVDNWKENRNIFIVQSYDDYVKIKKPSGLTEAFTNPFSYAREKLGYSLSREDQS\nQIRSLITDLAQQTDNIIESFNILKMGYNNSCIQQLIDYIKARLTQHEEEHVKYEFKNEFF\nVELVLSICNGSIKTFTEQHRLFREANDPVVYIEKKRKEYYSIFQKHIHGTSSAAIFGEII\nCQKLKEPIEQSVYKKTARELADEMTTNCPSLNGNRSNLEKHILKTLAEEENFDKYMKYIE\nTPKDHFKSFIRDEVSRYISEKFNISVLPKIKENIELLQQKIVKAAHQSTEEVNSGDVGLW\nLKNFRQQLSEELIFSETNFSGVSHEDVNDFNLLEVVIKKDLPKITSEISSAVNKENFEKK\nTDVTCRPEKLLIDHFCQCCWAQCPFCAAICTNTIENHDEDHSVPFHRVDGINGWHYNETT\nHLSAGFCTTSVASDKQFLESDVSFPYKDYKQAGGVYATWSITPDLSELPYWKWFVCRFQK\nNLEQKYEKTFDGHGKIPDEWKNHTKPDAIKSLDKCFV\n\n\n>tr|A0AC58J0N3-1|A0AB32TMU4_DANRE Isoform 1 of Interferon-induced very large GTPase 1 isoform X1 OS=Danio rerio OX=7955 GN=gvin1l PE=3 SV=1 CANONICAL=A0AB32TMU4-1\nMMDYRARYIQIKDAFKQQKTDTGSTSHGGDIFKAMSLYNKRPQQPERIDPMDVQMAVFHC\nADGFLKQMMVTKLSQCQYALPLLVPDPFTQQTEFSLWTFRKIAKSWKIRNTNNETISQTQ\nPIYKAETPMVFFFRFGSVSSSKSHLMNSLINEKHNTFFHRNCAGSSRSRVLMDGVVEIAW\nFCPSGKDTDKFNNCVAFCNLHGDAGEHEKQMKILIEMASVNVVLLPQLDSNDRSAKIIQE\nLFTNPKPLICLFTEDDSNIFELERKKFKIGLKYRNQSDVSEELRGAIQDCLLEASANFRL\nDAFKFSDIRVDEEDDEDCRRGREAAQQMIGLLDNKNLTEIKESFLPHQGKLWHQWCQKNK\nELHRPQGDEPDKIVSDKKTEMMNIRKQQHETDISEFMNHFIKTMDSHAKHKVFFLKWLTT\nLLDEHSSDDLSKLHNMYNTTWSMIVKLKEQKDNNNKPELKAKQAELEKISKDLQAAAFGL\nEHIMREISQIYESCSSVKEINKNLQVEPSPLPSLAAEMMISGFPLELMDGDAAHVPVVWV\nSAVLDQLVQQLKDQKVFVLSVLGIQSSGKSTMLNAMFGLQFAVSAGRCTRGAFMQLVKVS\nDEMKTEMNFDYILVVDTEGLRSLELAGKSTRGHDNELATFVIGLGNLTLINIFGENPSEM\nQDTLQIVVQAFMRMKKVRLYPSCVFVHQNVSDITAGEKNMEGRRKLQETLDEMTKLAAKD\nEVCDAERFSDVIKFDVQNDIKYFAQLWEGSPPMAPPNPNYCENVQELKKSIISHASKSQG\nIKLDDIKERINDLWEALLNERFVFSFRNSLEISAYRKLETKYSKWSWTLRSVMLETENKL\nHNLIENENIHEVEETHLQFELKKRSEEVKNSMSEFFEKDTDVEILIQWKTSFVIKIKELQ\nENIVRETKRKLNDILQQRGLKKKIDAQRTHHENTLYEKSKELALKLKDKAKDEETLKKEF\nDAFWQQTVKNTIKDTPKIKDIDIMRDVRKLLHDNYGSVSVDNWKENRNIFIVQSYDDYVK\nIKKPSGLTEAFTNPFSYAREKLGYSLSREDQSQIRSLITDLAQQTDNIIESFNILKMGYN\nNSCIQQLIDYIKARLTQHEEEHVKYEFKNEFFVELVLSICNGSIKTFTEQHRLFREANDP\nVVYIEKKRKEYYSIFQKHIHGTSSAAIFGEIICQKLKEPIEQSVYKKTARELADEMTTNC\nPSLNGNRSNLEKHILKTLAEEENFDKYMKYIETPKDHFKSFIRDEVSRYISEKFNISVLP\nKIKENIELLQQKIVKAAHQSTEEVNSGDVGLWLKNFRQQLSEELIFSETNFSGVSHEDVN\nDFNLLEVVIKKDLPKITSEISSAVNKENFEKKTDVTCRPEKLLIDHFCQCCWAQCPFCAA\nICTNTIENHDEDHSVPFHRVDGINGWHYNETTHLSAGFCTTSVASDKQFLESDVSFPYKD\nYKQAGGVYATWSITPDLSELPYWKWFVCRFQKNLEQKYEKTFDGHGKIPDEWKNHTKPDA\nIKSLDKCFV\n\n\n>tr|A0AB32TMU8-1|A0AB32TMU8_DANRE Isoform 1 of C2H2-type domain-containing protein OS=Danio rerio OX=7955 GN=LOC108183672 PE=4 SV=2 CANONICAL=A0AB32TMU8-1\nMRPPHLIEENEGSKEEKHHVKIEEKTHLQTDGVLKRRDKNRFTCTQCGKSLASKSKLKIH\nMMIHTGEKPFTCTQCGKSFNQSSNLNHHMMIHTGAKPFTCTQCGKSFNRSSHLNYHMMIH\nTGEKPFTCTQCGKGFNQSSNLNHHMRIHTGAKPFTCTQCGKSFNRLSHLNYHMMIHTGEK\nPFTCTQCGKSFNRSSHLNYHMMIHTGEKPFTCTQCGKTFNCSSHLNQHMKIHTGEKPFTC\nTQCGKSFIQSSSLNQHMRVHTGEKPFTCTHCGKSFNCSSHLNQHIKIHTGEKPFTCTQCG\nKSFIQSSSFNYHMMIHTGEKPFTCTQCGESFSKSSFFYKHVEGTHGHIAVVNTS\n\n\n>tr|A0AB32TMV0-1|A0AB32TMV0_DANRE Isoform 1 of C2H2-type domain-containing protein OS=Danio rerio OX=7955 GN=LOC137490969 PE=4 SV=1 CANONICAL=A0AB32TMV0-1\nMAFIKEKSEDVKIKETFTVKQEDLQEQTDLIEENERKEEEHHVKIEEKTHLQTDGILKRR\nDKNRLTCTQCGRNFGRKGDLKIHMRIHTGEKPFTCTQCGKSFSKSSSLNQHMRIHTGEKP\nFTCTQCGRSFSQSSYLNKHMMIHTGKKPFTCTQCGKSFRQSSSLNYHMMIHAGEKPFTCS\nQCGKSFSCSSHLNKHMMIHTGEKPFSCTQCGKSFRHSLFLKQHMMIHTGEKPFTCTQCGK\nSFSQSSSLNHHMRIHTGEKPFTCTECGKSFIQSSQLNRHIMIHTGEKPFTCTQCGKSFSQ\nSSNFNQHMMIHTGEKPFTCTHCGKSFSKSSSLNEHMTIHSGEKPFTCTQCRKSFSCSSHL\nNHHTRIHTGEKLFSCTQCGKSFRRSSSLKEHMRIHTGEKPFTCTQCGNRFSRSSNLNQHT\nMIHTGEKPFTCTQCGKSFSQSSSLNQHMRTHTGEKPFTCTQCGKSFIQSSQLNRHMRIHT\nAEKPFTCT\n\n\n>tr|A0AB32TMV3-1|A0AB32TMV3_DANRE Isoform 1 of NACHT, LRR and PYD domains-containing protein 3-like OS=Danio rerio OX=7955 GN=si:ch211-197e7.1 PE=4 SV=1 CANONICAL=A0AB32TMV3-1\nMAEERVKDSLSEKHSVRSGSCVSSSVSLKSDWSKEDPPKFSEKTPSSAQSVRSGSCVSSS\nVSLKSDRSKEHPLPNFREKTPSSAQSVEHELPDSGQETHRNHKSFTDNLQSIFQNLESKM\nFRFLKNEMEKFKKILQEENRQEFVKDYNENRSRITEAALDLTLFFLREIKQDQAADTLQD\nELFSINQFQCSLKKKYQSVFEGIAQQGDSTLLNNIYTDLYITQGASEQVNNEHEIRQLEA\nASRRHQSLETQVECKHLFEAAEQDEQIRTVLTKGVAGIGKSVSVQKFVLDWAEGKENQDI\nSFIFPLPFREMNLKEKERQSLKDLITQFFPETKGLNLTRSTRFKVLFILDGLDECRLPLN\nFAGNKTCRDVSSAVSLDVLLTNLIKGNLLPSALIWITSRPAAANKIPADCIDRLTEIRGF\nNDAQKEEYFRKRLTDQNQAREIIDHIKQSKILFIMCHIPVFCWISATVLQNILKLKHRAH\nAETLQESPKTLTQMYTHFLRFQIQQSRRKYDGENTADVSWDPKLILSLGKLAFQQLERNN\nVIFYESDLKDCGIDVYKASVYSGMCTQIFKKETGIILGTMYCFLHLSIQEFIAALYQHLI\nLDNNKKQAEKSRNESMINLLKTAVDKALENENGHLDLYLRFLLGLSLQSNRQLLRGLLTQ\nQDDRDESKKKIIAYIKQKLEGNLSPERSINLFYCLNELNDQTLLKEIQSHLSRGSLSSAR\nLSPAQWSALVFMLLTSEEELEEFELRKFQRSDECLIRLSAVIKTSKKALLQSCNVTVQSC\nKSLSKVLQSSNCVLRELDLSNNDLQDSGVKLLSDGLKSQHCKLETLRLAMCNLTVQCCES\nLSLALQSSNCVLRELDLSNNDLQDSGVKLLSNRLKSQYCKLETLRLSGCMVTEEGCGFLS\nSALTSNPSHLRELDLSYNHPGDSGVKLLSEKWQCPNYTLDKLNLDHGGEKRITAGLHKYV\nCFLTLDPNTAHIQLILSEENRKVKPVREDMMMMRKDQPYPDHPDRFDGLYPQVLCRESVC\nGCCYWETDWSGDGGVCISVSYKSIRRKGGVECEFGRNAQSWSLHCSSSRFIFIHNNTETR\nLPVKRLSKRIGVFVDHSAGTLIFYNIYRDTMSLIHSVQTTFTEPLCPGFRVYSGSSVKLS\n\n\n>tr|A0AB32TMW1-1|A0AB32TMW1_DANRE Isoform 1 of Uncharacterized protein isoform X2 OS=Danio rerio OX=7955 GN=LOC137490976 PE=4 SV=1 CANONICAL=A0AB32TS18-1\nMSGKSHKAMSDADWISRLKKFASTGVWPSNEGNRPAPRQKKWHEIYQRIEKCPLQSRGQR\nTLLGGVLKCTCGFHTQKSTASAAPAQTVQQPAPTVPAQEVMETRQLEAQPQPPSTPSVAS\nKISPQLSMFTKPRFSGSHIAAAKPNLSVARRPSQVDVQPSSAVCSASTPSTATQDLQVSA\nPVLTSTTAVTSSTEPSSIVSTAPSGSLLQAPSGVPLPRLWAETLPPEDHKWIASRLFKMG\nSKGKPELRDNLQLWYYPPQPALTYNQAPAPDRFFCHSLLLWMPYKLWRVKVLCPNPACGQ\nHQLTGGGLHKRARQVLDIDRMYNMVTETLICTKCKASHVSWSQTVLQQLDLGHRSEFRVI\nLTQK\n\n\n>tr|A0AB32TMW8-1|A0AB32TMW8_DANRE Isoform 1 of Protein NLRC3-like OS=Danio rerio OX=7955 GN=LOC108183454 PE=4 SV=1 CANONICAL=A0AB32TMW8-1\nMMENKYTSRDQDLFTGCSLVHQKRAEAEPSCVSMKSDWSMEQPIKFKSENTGPAVSSVHQ\nKRAEAEPSCVSMKSDWSMNRPITFRSKITQPAISVDRDDQTGDLQQDSLQPEHDELQRVK\nEQHKTSMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVLQMEKRARTK\nPSQHTPVYCNDIFKASAGAGHEEKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWADGK\nYHQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDES\nRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYINRLT\nEIQGFTEPQKEEYFRKRISDEHQASRVISHIRRARSLQIMCHIPIFCWISSTVLQKLLEE\nDVRAEIPKTLTEMYIHFLLIQIDTRKQKYEERDPKNLQGDPEKLQSNRGVINTLTVAFRQ\nLKFKVRKQKYEERDPKNLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDASV\nYSGICTEIFKEESVIHQRKVYSFIHLSFQEFLAAFFVFYCHLTENREPLRVIYEREYSNN\nQHLQASSEKSLYDLLSSAVVKAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESS\nENIRRITQDIKDMIKRDNPLSAERSINLFLCLLEVKDQTLAREIQEFVKSDKHSGLKLSP\nAHCSTISYMIEMSEEPLDELDFNKFNTSAEGRRRLIAAVRNCRRAL\n\n\n</pre>"
    },
    "readme": "Name\n   - Zebrafish Protein Isoform sequences (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Protein Isoform sequences (UniProtKB) dataset contains Danio rerio [taxid:7955] protein fasta sequences for the zebrafish isoform accessions from the UniProtKB database,. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all zebrafish isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-danio-rerio.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-danio-rerio.nt\n   Output Subdomain\n      Name: zebrafish_protein_allsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_protein_allsequences.fasta\n      Name: zebrafish_protein_allsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/zebrafish_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"57138\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/zebrafish_protein_allsequences.fasta"
}