{
    "bcoid": "GLY_001246",
    "title": "Bovine Protein Function (NCBI Refseq)",
    "description": "The Bovine Protein Function (NCBI RefSeq) dataset contains biological function annotation of Bos taurus ...",
    "filename_list": "bovine_protein_function_refseq.csv",
    "filename": "bovine_protein_function_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Function"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "E1BNS9-1...",
                "NP_001106720..."
            ],
            [
                "E1BNS9-1...",
                "NP_001106720..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "annotation"
                }
            ],
            [
                "E1BNS9-1",
                "NP_001106720",
                "protein_xref_refseq",
                "NP_001106720",
                "Hyaluronic acid induces sperm capacitation involving lactate dehydrogenase (LDH) and creatine kinase (CK) activities, thereby reducing oxidative metabolism, and this process is mediated by mAC."
            ],
            [
                "E1BNS9-1",
                "NP_001106720",
                "protein_xref_pubmed",
                "28238530",
                "Hyaluronic acid induces sperm capacitation involving lactate dehydrogenase (LDH) and creatine kinase (CK) activities, thereby reducing oxidative metabolism, and this process is mediated by mAC."
            ]
        ]
    },
    "readme": "Name\n   - Bovine Protein Function (NCBI Refseq)\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2024-11-11T19:50:56.731Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein Function (NCBI RefSeq) dataset contains biological function annotation of Bos taurus [taxid:9913] genes from GeneRIF section in the NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein function\n   - NCBI RefSeq\n   - geneRIF\n   - PMID\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the geneRIFs that contain protein function. The script also maps RefSeq accession to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: bovine_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_xref_refseq.csv\n      Name: refseq_protein_all_9913.gpff\n      URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2026_06_01/refseq_protein_all_9913.gpff\n   Output Subdomain\n      Name: bovine_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_function_refseq.csv\n      Name: bovine_protein_function_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_function_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"2063\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bovine_protein_function_refseq.csv"
}