{
    "bcoid": "GLY_001244",
    "title": "Bovine Protein Citations (RefSeq)",
    "description": "The Bovine Protein Citations (RefSeq) datasets contains Bos taurus [taxid:9913] UniProtKB accessions ...",
    "filename_list": "bovine_protein_citations_refseq.csv",
    "filename": "bovine_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q58DS7-1...",
                "Paraoxonase ..."
            ],
            [
                "P16386-1...",
                "Regulation o..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q58DS7-1",
                "Paraoxonase (PON) 1, 2 and 3 expression in granulosa cells and PON1 activity in follicular fluid of dairy cows.",
                "Reproduction in domestic animals = Zuchthygiene",
                "2013-12",
                "Schneider A, Absalon-Medina V A, Esposito G, Corr\u00eaa M N, Butler W R",
                "protein_xref_pubmed",
                "23758560",
                "protein_xref_refseq",
                "NP_001013606"
            ],
            [
                "P16386-1",
                "Regulation of hormone-sensitive lipase expression by saturated fatty acids and hormones in bovine mammary epithelial cells.",
                "Biochemical and biophysical research communications",
                "2008-11-07",
                "Yonezawa Tomo, Haga Satoshi, Kobayashi Yosuke, Katoh Kazuo, Obara Yoshiaki",
                "protein_xref_pubmed",
                "18755148",
                "protein_xref_refseq",
                "NP_001073689"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Protein Citations (RefSeq)\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2024-11-11T19:36:10.445Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein Citations (RefSeq) datasets contains Bos taurus [taxid:9913] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: bovine_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_function_refseq.csv\n   Output Subdomain\n      Name: bovine_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_refseq.csv\n      Name: bovine_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1352\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bovine_protein_citations_refseq.csv"
}