{
    "bcoid": "GLY_001230",
    "title": "Bovine Glycohydrolases",
    "description": "The Bovine Glycohydrolases dataset contains a list of Bos taurus [taxid:9913] glycohydrolases derived ...",
    "filename_list": "bovine_protein_glycohydrolase.csv",
    "filename": "bovine_protein_glycohydrolase.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Glycohydrolases"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "pathway/enzymes"
        ]
    },
    "minitable": {
        "content": [
            [
                "A6BMK7-1...",
                "Bos taurus (..."
            ],
            [
                "O97859-1...",
                "Bos taurus (..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "species..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "species"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_name"
                },
                {
                    "type": "string",
                    "label": "ec_number"
                },
                {
                    "type": "string",
                    "label": "brenda_ec_number"
                },
                {
                    "type": "string",
                    "label": "cazy_gh_family"
                },
                {
                    "type": "string",
                    "label": "interpro_id"
                },
                {
                    "type": "string",
                    "label": "pfam_ac"
                },
                {
                    "type": "string",
                    "label": "go_molecular_function"
                }
            ],
            [
                "A6BMK7-1",
                "Bos taurus (Bovine)",
                "reviewed",
                "NEU1",
                "Sialidase-1 (EC 3.2.1.18) (Acetylneuraminyl hydrolase) (Lysosomal sialidase) (N-acetyl-alpha-neuraminidase 1)",
                "3.2.1.18",
                "",
                "GH33",
                "IPR011040|IPR026856|IPR036278",
                "PF13088",
                "exo-alpha-(2->3)-sialidase activity [GO:0052794]| exo-alpha-(2->6)-sialidase activity [GO:0052795]| exo-alpha-(2->8)-sialidase activity [GO:0052796]| exo-alpha-sialidase activity [GO:0004308]"
            ],
            [
                "O97859-1",
                "Bos taurus (Bovine)",
                "reviewed",
                "NEU3",
                "Sialidase-3 (EC 3.2.1.18) (Ganglioside sialidase) (Membrane sialidase) (N-acetyl-alpha-neuraminidase 3)",
                "3.2.1.18",
                "3.2.1.18",
                "GH33",
                "IPR011040|IPR026856|IPR036278",
                "PF13088",
                "exo-alpha-(2->3)-sialidase activity [GO:0052794]| exo-alpha-(2->6)-sialidase activity [GO:0052795]| exo-alpha-(2->8)-sialidase activity [GO:0052796]| exo-alpha-sialidase activity [GO:0004308]"
            ]
        ]
    },
    "readme": "Name\n   - Bovine Glycohydrolases\n\nVersion\n   - v-2.12.1\n\nModified on\n   - 2024-11-11T15:49:59.705Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Jeet Vora [jeetvora@gwu.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Glycohydrolases dataset contains a list of Bos taurus [taxid:9913] glycohydrolases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. If you use this dataset please provide proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - glycohydrolase\n   - glycosidase\n   - EC Number\n   - CAZy\n\n   Pipeline Steps\n   - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: bovine_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/bovine_protein_glycohydrolase.csv\n      Name: bovine_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_masterlist.csv\n   Output Subdomain\n      Name: bovine_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_glycohydrolase.csv\n      Name: bovine_protein_glycohydrolase.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/bovine_protein_glycohydrolase.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"26\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/bovine_protein_glycohydrolase.csv"
}