{
    "bcoid": "GLY_001143",
    "title": "Rat GlyGen-PDB Cross References Mapping",
    "description": "The rat GlyGen-PDB Cross References dataset contains Rattus norvegicus [taxid:10116] UniProtKB accessions ...",
    "filename_list": "rat_protein_pdb_map.csv",
    "filename": "rat_protein_pdb_map.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "GlyGen-PDB Cross References Mapping"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "pdb_map"
        ]
    },
    "minitable": {
        "content": [
            [
                "A4KWA1-1...",
                "region_1..."
            ],
            [
                "A4KWA1-1...",
                "region_1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "sequence_reg..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "sequence_region"
                },
                {
                    "type": "string",
                    "label": "pdb_id"
                },
                {
                    "type": "string",
                    "label": "pdb_chain"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "overlap_ratio"
                },
                {
                    "type": "string",
                    "label": "overlap_category"
                },
                {
                    "type": "string",
                    "label": "experimental_method"
                },
                {
                    "type": "string",
                    "label": "resolution"
                },
                {
                    "type": "string",
                    "label": "selection_flag"
                }
            ],
            [
                "A4KWA1-1",
                "region_1",
                "5j2s",
                "a/b",
                "78",
                "223",
                "1.0",
                "0.75",
                "X-Ray_Crystallography",
                "2.0",
                "True"
            ],
            [
                "A4KWA1-1",
                "region_1",
                "7odu",
                "c",
                "78",
                "223",
                "1.0",
                "0.75",
                "X-Ray_Crystallography",
                "3.0",
                "False"
            ]
        ]
    },
    "readme": "Name\n   - Rat GlyGen-PDB Cross References Mapping\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2024-08-01T00:18:04\n\nModified on\n   - 2024-07-31T17:06:55.479Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The rat GlyGen-PDB Cross References dataset contains Rattus norvegicus [taxid:10116] UniProtKB accessions mapped to PDB accessions for the purpose of PDB to GlyGen cross references. If you use this dataset please provide proper attribution to UniProtKB, PDB and GlyGen.\n\nDescription Domain\n   Keywords\n   - UniProtKB\n   - GlyGen\n   - PDB\n   - crossreferences\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions, maps them to PDB database accessions/identifiers, and extracts the data as a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_xref_alphafolddb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_xref_alphafolddb.csv\n   Output Subdomain\n      Name: rat_protein_pdb_map.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_pdb_map.csv\n      Name: rat_protein_pdb_map.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/rat_protein_pdb_map.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"13924\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/rat_protein_pdb_map.csv"
}