{
    "bcoid": "GLY_001116",
    "title": "Yeast Glycosylation Sites (CarbBank)",
    "description": "The Yeast CarbBank Glycosylation Sites dataset contains information on Saccharomyces cerevisiae S288C ...",
    "filename_list": "yeast_proteoform_glycosylation_sites_carbbank.csv",
    "filename": "yeast_proteoform_glycosylation_sites_carbbank.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Glycosylation Sites"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "glycosylation_sites_"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0CW41-1...",
                "..."
            ],
            [
                "P0CW41-1...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycosylatio..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "start_aa"
                },
                {
                    "type": "string",
                    "label": "end_aa"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P0CW41-1",
                "",
                "",
                "G08172UF",
                "N-linked",
                "protein_xref_pubmed",
                "7496153",
                "protein_xref_glygen_ds",
                "GLY_001116",
                "",
                "",
                "",
                "",
                ""
            ],
            [
                "P0CW41-1",
                "",
                "",
                "G46565HP",
                "N-linked",
                "protein_xref_pubmed",
                "7496153",
                "protein_xref_glygen_ds",
                "GLY_001116",
                "",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Yeast Glycosylation Sites (CarbBank)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2024-12-10T21:02:33\n\nModified on\n   - 2024-12-10T21:45:47.463Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast CarbBank Glycosylation Sites dataset contains information on Saccharomyces cerevisiae S288C [taxid:559292] glycan and glycosylation sites mapped to the UniProtKB canonical accessions derived from the CarbBank resource. CarbBank was a pioneering database that cataloged carbohydrate structures and related biochemical information. Although no longer actively maintained, CarbBank laid the groundwork for modern glycoinformatics tools and databases, influencing subsequent efforts to document carbohydrate-related data systematically. Please cite GlyGen and CarbBank if you use this dataset.\n\nDescription Domain\n   Keywords\n   - glycosylation\n   - reported glycosylation\n   - Carbbank\n\n   Pipeline Steps\n   - Step-1: The script performs QC steps and creates a proteoform dataset according to the GlyGen data model.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_proteoform_glycosylation_sites_carbbank.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/yeast_proteoform_glycosylation_sites_carbbank.csv\n   Output Subdomain\n      Name: yeast_proteoform_glycosylation_sites_carbbank.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_proteoform_glycosylation_sites_carbbank.csv\n      Name: yeast_proteoform_glycosylation_sites_carbbank.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/yeast_proteoform_glycosylation_sites_carbbank.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/yeast_proteoform_glycosylation_sites_carbbank.csv"
}