{
    "bcoid": "GLY_001015",
    "title": "Chicken Proteoform Glycosylation Citations (UniProtKB)",
    "description": "The Chicken Proteoform Glycosylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] ...",
    "filename_list": "chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filename": "chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P79762-1...",
                "Insights int..."
            ],
            [
                "P51890-1...",
                "Identificati..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P79762-1",
                "Insights into egg coat assembly and egg-sperm interaction from the X-ray structure of full-length ZP3.",
                "Cell",
                "2010-10-29",
                "Han Ling, Monn\u00e9 Magnus, Okumura Hiroki, Schwend Thomas, Cherry Amy L, Flot David, Matsuda Tsukasa, Jovine Luca",
                "protein_xref_pubmed",
                "20970175",
                "protein_xref_uniprotkb_gly",
                "P79762",
                "",
                ""
            ],
            [
                "P51890-1",
                "Identification of the N-linked oligosaccharide sites in chick corneal lumican and keratocan that receive keratan sulfate.",
                "The Journal of biological chemistry",
                "1998-04-17",
                "Dunlevy J R, Neame P J, Vergnes J P, Hassell J R",
                "protein_xref_pubmed",
                "9545293",
                "protein_xref_uniprotkb_gly",
                "P51890",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2021-06-03T16:32:02.053252\n\nModified on\n   - 2024-05-29T19:23:13.269Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Proteoform Glycosylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] citation details of the publications present in the dataset Chicken Glycosylation Sites (UniProtKB) (https://data.glygen.org/GLY_000965).\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      Name: chicken_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"25\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv"
}