The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp" ], [ "R-SSC-9823910", "Recruitment of TBK1 to K63polyUb-TANK:K63polyUb-TRAF3:TRIF:activated TLR4 ", "cytosol, endosome membrane", "", "R-SSC-936964", "", "This event has been computationally inferred from an event that has been demonstrated in another species.
The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.
More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp" ] ] }, "readme": "Name\n - Pig Protein Reactions (Reactome)\n\nVersion\n - v-2.12.1\n\nCreated on\n - \n\nModified on\n - 2024-05-17T11:24:17.475Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Pig Protein Reactions (Reactome) dataset contains reactions information for pathways for Sus scrofa [taxid:9823] UniProtKB accessions that includes reaction participants, pathway ID, reaction ID, PMID etc from Reactome database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n Keywords\n - Reactome\n - Pathway\n - Reactions\n - PMID\n\n Pipeline Steps\n - Step-1: The script loads the Reactome reaction data from the triplestore containing triples from nt file to retrieve the information associated with the Reactome IDs and maps it to the UniProtKB canonical accessions and extracts the dataset in the csv format\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: all_blacklisted_pmids.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n Name: uniprot-proteome-sus-scrofa.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-sus-scrofa.nt\n Output Subdomain\n Name: pig_protein_reactions_reactome.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_reactions_reactome.csv\n Name: pig_protein_reactions_reactome.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/pig_protein_reactions_reactome.stat.csv\n\nFields\n Name: \"reaction_id\"\"\n Description: \"\"\n Unique Values: \"8019\"", "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/pig_protein_reactions_reactome.csv" }