{
    "bcoid": "GLY_000852",
    "title": "Dicty Protein Names (NCBI RefSeq)",
    "description": "The Dicty Protein Names (NCBI RefSeq) dataset contains Dictyostelium discoideum [taxid:44689] protein ...",
    "filename_list": "dicty_protein_proteinnames_refseq.csv",
    "filename": "dicty_protein_proteinnames_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Names"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "names"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q54D80-1...",
                "XP_629616..."
            ],
            [
                "Q54D90-1...",
                "XP_629606..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "refseq_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_ac"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                }
            ],
            [
                "Q54D80-1",
                "XP_629616",
                "carbohydrate/purine kinase domain-containing protein"
            ],
            [
                "Q54D90-1",
                "XP_629606",
                "hypothetical protein"
            ]
        ]
    },
    "readme": "Name\n   - Dicty Protein Names (NCBI RefSeq)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:15.752Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty Protein Names (NCBI RefSeq) dataset contains Dictyostelium discoideum [taxid:44689] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n   Keywords\n   - protein names\n   - NCBI RefSeq\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: dicty_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_xref_refseq.csv\n   Output Subdomain\n      Name: dicty_protein_proteinnames_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_proteinnames_refseq.csv\n      Name: dicty_protein_proteinnames_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_proteinnames_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"12648\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/dicty_protein_proteinnames_refseq.csv"
}