{
    "bcoid": "GLY_000845",
    "title": "Dicty Protein Information (NCBI RefSeq)",
    "description": "The Dicty Protein Information (NCBI RefSeq) dataset contains Dictyostelium discoideum [taxid:44689] protein ...",
    "filename_list": "dicty_protein_info_refseq.csv",
    "filename": "dicty_protein_info_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Dictyostelium discoideum"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q54AK5-1...",
                "XP_628697..."
            ],
            [
                "Q54AK4-1...",
                "XP_628698..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "p_refseq_ac_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "p_refseq_ac_best_match"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_name"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_length"
                },
                {
                    "type": "string",
                    "label": "refseq_protein_summary"
                }
            ],
            [
                "Q54AK5-1",
                "XP_628697",
                "hypothetical protein",
                "35",
                ""
            ],
            [
                "Q54AK4-1",
                "XP_628698",
                "hypothetical protein",
                "341",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Dicty Protein Information (NCBI RefSeq)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:15.476Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Dicty Protein Information (NCBI RefSeq) dataset contains Dictyostelium discoideum [taxid:44689] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein information\n   - protein length\n   - NCBI RefSeq\n   - protein summary\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: dicty_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_xref_refseq.csv\n      Name: refseq_protein_all_44689.gpff\n      URI: https:/data.glygen.org/ln2downloads/ncbi/refseq/2026_06_01/refseq_protein_all_44689.gpff\n   Output Subdomain\n      Name: dicty_protein_info_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_info_refseq.csv\n      Name: dicty_protein_info_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/dicty_protein_info_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"12648\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/dicty_protein_info_refseq.csv"
}