{
    "bcoid": "GLY_000727",
    "title": "Human Protein Biomarkers Citations (Biomarker Database)",
    "description": "Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset ...",
    "filename_list": "human_protein_citations_biomarkers.csv",
    "filename": "human_protein_citations_biomarkers.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Biomarkers Citations (Biomarker Database)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P02771-1...",
                "Des-gamma ca..."
            ],
            [
                "P19429-1...",
                "Cardiac trop..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "biomarker_id"
                }
            ],
            [
                "P02771-1",
                "Des-gamma carboxyprothrombin can differentiate hepatocellular carcinoma from nonmalignant chronic liver disease in american patients.",
                "Hepatology (Baltimore, Md.)",
                "2003 May",
                "Marrero JA, Su GL, Wei W, Emick D, Conjeevaram HS, Fontana RJ, Lok AS",
                "protein_xref_pubmed",
                "12717392",
                "protein_xref_biomarkerkb",
                "BB1524-1",
                "BB1524-1"
            ],
            [
                "P19429-1",
                "Cardiac troponin I in patients with coronavirus disease 2019 (COVID-19): Evidence from a meta-analysis.",
                "Progress in cardiovascular diseases",
                "2020 May-Jun",
                "Lippi G, Lavie CJ, Sanchis-Gomar F",
                "protein_xref_pubmed",
                "32169400",
                "protein_xref_biomarkerkb",
                "AN6373-1",
                "AN6373-1"
            ]
        ]
    },
    "readme": "Name\n   - Human Protein Biomarkers Citations (Biomarker Database)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-03-03T02:24:59.574Z\n\nModified on\n   - 2024-05-17T11:24:10.870Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - Human Protein Biomarkers Citations dataset contains details of the publication present in the dataset Human Protein Cancer Biomarkers https://data.glygen.org/GLY_000625\n\nDescription Domain\n   Keywords\n   - Biomarkers\n   - BiomarkerDB\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_biomarkers.csv\n   Output Subdomain\n      Name: human_protein_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_biomarkers.csv\n      Name: human_protein_citations_biomarkers.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_citations_biomarkers.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"229\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_citations_biomarkers.csv"
}