{
    "bcoid": "GLY_000712",
    "title": "Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)",
    "description": "The Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (O-GlcNAc Atlas)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "Tau post-tra..."
            ],
            [
                "A0A087WXM9-1...",
                "A triarylpho..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "",
                "Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice.",
                "Nature neuroscience",
                "2015 Aug",
                "Morris M, Knudsen GM, Maeda S, Trinidad JC, Ioanoviciu A, Burlingame AL, Mucke L",
                "protein_xref_pubmed",
                "26192747",
                "protein_xref_pubmed",
                "26192747",
                "G49108TO",
                ""
            ],
            [
                "A0A087WXM9-1",
                "A triarylphosphine-trimethylpiperidine reagent for the one-step derivatization and enrichment of protein post-translational modifications and identification by mass spectrometry.",
                "Chemical communications (Cambridge, England)",
                "2018 Dec 6",
                "Huo B, Zhang W, Zhao X, Dong H, Yu Y, Wang J, Qian X, Qin W",
                "protein_xref_pubmed",
                "30379171",
                "protein_xref_oglcnac_atlas",
                "A0A087WXM9",
                "G49108TO",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2023-02-27T21:08:01.227Z\n\nModified on\n   - 2024-05-17T11:24:10.298Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Jungfeng Ma [junfeng.ma@georgetown.edu ]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human O-GlcNAc Glycosylation Citations (O-GlcNAc Atlas) dataset contains details of the publication present in the dataset Human O-GlcNAc Glycosylation Sites (O-GlcNAc Atlas)  https://data.glygen.org/GLY_000708, contributed by Jungfeng Ma's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv\n      Name: human_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_atlas.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"3976\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_proteoform_citations_glycosylation_sites_oglcnac_atlas.csv"
}