{
    "bcoid": "GLY_000703",
    "title": "Glycan Pathway GlycoTree",
    "description": "The dataset contains pathway data for all N-glycans which are fully mapped to the GlycoTree framework. ...",
    "filename_list": "glycan_pathway_glycotree.csv",
    "filename": "glycan_pathway_glycotree.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Pathway GlycoTree"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens",
            "Rattus norvegicus",
            "Rattus",
            "Mus musculus",
            "Sus scrofa",
            "Drosophila melanogaster"
        ],
        "file_category": [
            "pathway/enzymes"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00027JG...",
                "G94514IB..."
            ],
            [
                "G00027JG...",
                "G94514IB..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "source..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "source"
                },
                {
                    "type": "string",
                    "label": "target"
                },
                {
                    "type": "string",
                    "label": "residue_id"
                },
                {
                    "type": "string",
                    "label": "residue_name"
                },
                {
                    "type": "string",
                    "label": "enzyme_uniprotkb_ac"
                },
                {
                    "type": "string",
                    "label": "enzyme_tax_name"
                }
            ],
            [
                "G00027JG",
                "G94514IB",
                "G23119MJ",
                "O167",
                "α-L-Fucp",
                "P19526",
                "Homo sapiens"
            ],
            [
                "G00027JG",
                "G94514IB",
                "G23119MJ",
                "O167",
                "α-L-Fucp",
                "Q10981",
                "Homo sapiens"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Pathway GlycoTree\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2022-09-14T12:37:04.198762\n\nModified on\n   - 2024-05-17T11:24:09.990Z\n\nCreated by\n   - Karina Martinez [karinamartinez@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Will York [will@ccrc.uga.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset contains pathway data for all N-glycans which are fully mapped to the GlycoTree framework. Each pathway specifies details for a particular reaction catalyzed by enzymes (UniProtKB Accession) which effect the associated glycan structures (GlyTouCan Accessions).\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - Pathway\n   - Glycotree\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the source author and a python script was used to extract the following keys: glytoucan_ac,source,target,residue_id,residue_name,enzyme_uniprotkb_ac,enzyme_tax_name. The script also assigned the recommended enzyme taxonomy name based on the UniProtKB accession. \n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: allPaths.json\n      URI: https:/data.glygen.org/ln2downloads/sandbox/07_27_2026/allPaths.json\n   Output Subdomain\n      Name: glycan_pathway_glycotree.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_pathway_glycotree.csv\n      Name: glycan_pathway_glycotree.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_pathway_glycotree.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\"\n     Description: \"\"\n      Unique Values: \"5787\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/glycan_pathway_glycotree.csv"
}