{
    "bcoid": "GLY_000678",
    "title": "Fruitfly Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Fruitfly Proteoform Citations (iPTMNet) contains Drosophila melanogaster [taxid:7227] publication ...",
    "filename_list": "fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9VT65-1...",
                "Regulation o..."
            ],
            [
                "Q9XYF4-1...",
                "Metabolic re..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "Q9VT65-1",
                "Regulation of calpain B from Drosophila melanogaster by phosphorylation.",
                "The FEBS journal",
                "2009-09",
                "Kov\u00e1cs L\u00e1szl\u00f3, Alexa Anita, Klement Eva, K\u00f3kai Endre, Tantos Agnes, G\u00f3gl Gerg\u00f6, Sperka Tam\u00e1s, Medzihradszky Katalin F, T\u00f6zs\u00e9r J\u00f3zsef, Dombr\u00e1di Viktor, Friedrich P\u00e9ter",
                "protein_xref_pubmed",
                "19694808",
                "protein_xref_iptmnet",
                "Q9VT65",
                ""
            ],
            [
                "Q9XYF4-1",
                "Metabolic regulation of Drosophila apoptosis through inhibitory phosphorylation of Dronc.",
                "The EMBO journal",
                "2010-09-15",
                "Yang Chih-Sheng, Thomenius Michael J, Gan Eugene C, Tang Wanli, Freel Christopher D, Merritt Thomas J S, Nutt Leta K, Kornbluth Sally",
                "protein_xref_pubmed",
                "20700104",
                "protein_xref_iptmnet",
                "Q9XYF4",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2022-09-02T13:26:18.780372\n\nModified on\n   - 2024-12-05T19:38:57.798Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Proteoform Citations (iPTMNet) contains Drosophila melanogaster [taxid:7227] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - iPTMnet\n   - PubMed\n   - Phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"761\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/fruitfly_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}