{
    "bcoid": "GLY_000512",
    "title": "HCV1a Proteoform Citations (Literature)",
    "description": "The HCV1a Proteoform Citations (Literature) dataset provides citation details corresponding to the PubMed ...",
    "filename_list": "hcv1a_proteoform_citations_glycosylation_sites_literature.csv",
    "filename": "hcv1a_proteoform_citations_glycosylation_sites_literature.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis C virus (isolate H77)"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "citations"
        ]
    },
    "minitable": {
        "content": [
            [
                "P27958-1...",
                "Mass spectro..."
            ],
            [
                "P27958-1...",
                "Mass spectro..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "isoform_mapping_notes"
                }
            ],
            [
                "P27958-1",
                "Mass spectrometric characterization of glycosylation of hepatitis C virus E2 envelope glycoprotein reveals extended microheterogeneity of N-glycans.",
                "Journal of the American Society for Mass Spectrometry",
                "2008 Mar",
                "Iacob RE, Perdivara I, Przybylski M, Tomer KB",
                "protein_xref_pubmed",
                "18187336",
                "protein_xref_data_submission",
                "GLY_000335",
                "G92050GC",
                ""
            ],
            [
                "P27958-1",
                "Mass spectrometric characterization of glycosylation of hepatitis C virus E2 envelope glycoprotein reveals extended microheterogeneity of N-glycans.",
                "Journal of the American Society for Mass Spectrometry",
                "2008 Mar",
                "Iacob RE, Perdivara I, Przybylski M, Tomer KB",
                "protein_xref_pubmed",
                "18187336",
                "protein_xref_data_submission",
                "GLY_000335",
                "G02815KT",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1a Proteoform Citations (Literature)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-06-26T15:07:28.950575\n\nModified on\n   - 2024-05-17T11:24:03.008Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The HCV1a Proteoform Citations (Literature) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLY_000335. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - Literature\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n   Output Subdomain\n      Name: hcv1a_proteoform_citations_glycosylation_sites_literature.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1a_proteoform_citations_glycosylation_sites_literature.csv\n      Name: hcv1a_proteoform_citations_glycosylation_sites_literature.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/hcv1a_proteoform_citations_glycosylation_sites_literature.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/hcv1a_proteoform_citations_glycosylation_sites_literature.csv"
}