{
    "bcoid": "GLY_000507",
    "title": "Human Cancer Mutation LOG and GOG effect",
    "description": "",
    "filename_list": "human_protein_mutation_cancer_glycoeffect.csv",
    "filename": "human_protein_mutation_cancer_glycoeffect.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Somatic Cancer Mutations LOG-GOG"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "mutation_"
        ]
    },
    "minitable": {
        "content": [
            [
                "P42345-1...",
                "2215..."
            ],
            [
                "P42345-1...",
                "2213..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "aa_pos..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "aa_pos"
                },
                {
                    "type": "string",
                    "label": "ref_aa"
                },
                {
                    "type": "string",
                    "label": "alt_aa"
                },
                {
                    "type": "string",
                    "label": "chr_id"
                },
                {
                    "type": "string",
                    "label": "chr_start_pos"
                },
                {
                    "type": "string",
                    "label": "chr_end_pos"
                },
                {
                    "type": "string",
                    "label": "ref_nt"
                },
                {
                    "type": "string",
                    "label": "alt_nt"
                },
                {
                    "type": "string",
                    "label": "patients_positive"
                },
                {
                    "type": "string",
                    "label": "patients_tested"
                },
                {
                    "type": "string",
                    "label": "mut_freq"
                },
                {
                    "type": "string",
                    "label": "data_source"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "do_name"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "filter_flags"
                },
                {
                    "type": "string",
                    "label": "mim_id"
                },
                {
                    "type": "string",
                    "label": "somatic_status"
                },
                {
                    "type": "string",
                    "label": "minor_allelic_frequency"
                },
                {
                    "type": "string",
                    "label": "protein_class"
                },
                {
                    "type": "string",
                    "label": "is_known_glycoprotein"
                },
                {
                    "type": "string",
                    "label": "motif_start"
                },
                {
                    "type": "string",
                    "label": "ref_motif"
                },
                {
                    "type": "string",
                    "label": "alt_motif"
                },
                {
                    "type": "string",
                    "label": "effect"
                }
            ],
            [
                "P42345-1",
                "2215",
                "S",
                "Y",
                "1",
                "11124516",
                "11124516",
                "G",
                "T",
                "0",
                "0",
                "0.0",
                "civic",
                "363",
                "DOID:363 / uterine cancer",
                "protein_xref_biomuta",
                "P42345",
                "Somatic mutation passed 1 out of 6 filters: num. of cancers (7).",
                "",
                "1",
                "",
                "none",
                "yes",
                "2215",
                "S",
                "Y",
                "o-glyco-site-loss"
            ],
            [
                "P42345-1",
                "2213",
                "P",
                "S",
                "1",
                "11124523",
                "11124523",
                "G",
                "A",
                "0",
                "0",
                "0.0",
                "civic",
                "4159",
                "DOID:4159 / skin cancer",
                "protein_xref_biomuta",
                "P42345",
                "Somatic mutation passed 1 out of 6 filters: n-glyco-sequon-gain (NDP->NDS).",
                "",
                "1",
                "",
                "none",
                "yes",
                "2211",
                "NDP",
                "NDS",
                "n-glyco-sequon-gain"
            ]
        ]
    },
    "readme": "Name\n   - Human Cancer Mutation LOG and GOG effect\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-06-25T13:28:50.371628\n\nModified on\n   - 2024-05-17T11:24:02.862Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nExecution Domain\n   Scripts\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/glycan_masterlist.csv\n      Name: aadict.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/misc/aadict.csv\n   Output Subdomain\n      Name: human_protein_mutation_cancer_glycoeffect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_mutation_cancer_glycoeffect.csv\n      Name: human_protein_mutation_cancer_glycoeffect.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/human_protein_mutation_cancer_glycoeffect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"18869\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/human_protein_mutation_cancer_glycoeffect.csv"
}