{
    "bcoid": "GLY_000444",
    "title": "SARS-CoV2 Protein Site Annotation",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Site Annotation (UniProtKB) dataset contains Severe ...",
    "filename_list": "sarscov2_protein_site_annotation_uniprotkb.csv",
    "filename": "sarscov2_protein_site_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Severe acute respiratory syndrome coronavirus 2"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "site annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0DTC1-1...",
                "..."
            ],
            [
                "P0DTC1-1...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "ann_type"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "annotation"
                },
                {
                    "type": "string",
                    "label": "ecoid"
                },
                {
                    "type": "string",
                    "label": "ref_aa"
                },
                {
                    "type": "string",
                    "label": "alt_aa"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "P0DTC1-1",
                "",
                "Active_Site_Annotation",
                "3304",
                "3304",
                "For 3CL-PRO activity",
                "ECO_0000269",
                "H",
                "",
                "protein_xref_uniprotkb",
                "P0DTC1"
            ],
            [
                "P0DTC1-1",
                "",
                "Active_Site_Annotation",
                "3304",
                "3304",
                "For 3CL-PRO activity",
                "ECO_0000269",
                "H",
                "",
                "protein_xref_pubmed",
                "32198291"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Protein Site Annotation\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2020-04-03T11:59:02.009860\n\nModified on\n   - 2024-06-03T20:43:07.128Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Site Annotation (UniProtKB) dataset contains Severe acute respiratory syndrome coronavirus 2 [taxid:2697049] site annotations for UniProtKB canonical accessions. The dataset contains information about UniProtKB annotations with their amino acid range. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - site annotation\n   - amino acid range\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script extracts the site annotation triples from the triplestore for the UniProtKB canonical sequences and extracts as a dataset in a csv format.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: all_blacklisted_pmids.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/compiled/all_blacklisted_pmids.csv\n      Name: sarscov2_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_masterlist.csv\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_site_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_site_annotation_uniprotkb.csv\n      Name: sarscov2_protein_site_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/sarscov2_protein_site_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"13\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/sarscov2_protein_site_annotation_uniprotkb.csv"
}