{
    "bcoid": "GLY_000317",
    "title": "Mouse Protein PTM Annotation (UniProtKB)",
    "description": "The Mouse Protein PTM Annotation (UniProtKB) dataset contains Mus musculus [taxid:10090] PTM annotations ...",
    "filename_list": "mouse_protein_ptm_annotation_uniprotkb.csv",
    "filename": "mouse_protein_ptm_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PTM annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "file_category": [
            "annotation"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q3UY90-1...",
                "protein_xref..."
            ],
            [
                "Q3UY90-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "ptm_annotation"
                }
            ],
            [
                "Q3UY90-1",
                "protein_xref_uniprotkb",
                "Q3UY90",
                "ECO_0000269",
                "Proteolytically cleaved. Cleaved at Arg-112 and Arg-424 leading to a processed mature product of 35 kDa. The cleavage takes place in the Golgi apparatus."
            ],
            [
                "Q3UY90-1",
                "protein_xref_pubmed",
                "30188967",
                "ECO_0000269",
                "Proteolytically cleaved. Cleaved at Arg-112 and Arg-424 leading to a processed mature product of 35 kDa. The cleavage takes place in the Golgi apparatus."
            ]
        ]
    },
    "readme": "Name\n   - Mouse Protein PTM Annotation (UniProtKB)\n\nVersion\n   - v-2.12.1\n\nCreated on\n  - 2019-11-30T14:05:28.986536\n\nModified on\n   - 2024-06-03T20:37:49.852Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Protein PTM Annotation (UniProtKB) dataset contains Mus musculus [taxid:10090] PTM annotations for UniProtKB canonical accessions. The annotation is the curated statements of mainly about glycosylation and phosphorylation. If you use this dataset please give proper attribution to UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - ptm annotation\n   - glycosylation\n   - phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the ptm annotation strings from the triplestore for the UniProtKB canonical sequences and extracts as a dataset in a csv format. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2026_06_13/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_ptm_annotation_uniprotkb.csv\n      Name: mouse_protein_ptm_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.12.1/reviewed/mouse_protein_ptm_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\"\n     Description: \"\"\n      Unique Values: \"1841\"",
    "downloadurl": "/ln2data/releases/data/v-2.12.1/reviewed/mouse_protein_ptm_annotation_uniprotkb.csv"
}